Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26890 1311 / 0 KAM2, GRV2 KATAMARI2, GRAVITROPISM DEFECTIVE 2, DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033077 [exp] 891 / 0 AT2G26890 2123 / 0.0 KATAMARI2, GRAVITROPISM DEFECTIVE 2, DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G072600 [exp] 1460 / 0 AT2G26890 3625 / 0.0 KATAMARI2, GRAVITROPISM DEFECTIVE 2, DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017748 pacid=23176351 polypeptide=Lus10017748 locus=Lus10017748.g ID=Lus10017748.BGIv1.0 annot-version=v1.0 ATGCAAGGGTTGCAAGGTCCTCAACTCTGGAGATTGCTGCTGCTACTTAAAGGACAATGCATTCTGTATAGAAGATATGGATATGTCTTGGAACCTTTCA AATATGCTGGCTATCCAATGTTGCTGAATGCAGTTACAGTAGACAAGGACGATAACAATTTTCTGTCCTCTGACAGGGCACCTTTGCTTGTTGCAGCGTC AGAGCTGATTTGGCTGACGTGTGCAGCTTCCTCATTGAACGGTGAAGAGCTTGTTCGAGATGGAGGGATACAGCTACTAGCAATTCTTCTTTCTCGCTGC ATGATGGTTGTTCAGCCAACCACTTGTGTAAATGAACCACCTGCTACAATAGTCACAAATGTCATGCGAACCTTCTCTGTTTTGAGTCAGTTTGAGAGCG CTAGAGCTGAAATACTTGAAGTTTCTGGTCTTATTGAGGACATAGTGCACTGCAATGAACTTGAGCTAATGCCTGAAGCTGGTGATGCTGCACTCCAGAC AATTGCCAATCTGTCTGTATCCTTCAATTTGCAGAATGCATTGTTGAAAGCTGGTGTGCTTTGGTTTCTTTTGCCTTTGTTGCTCCAATATGACTCAACC GCTGAGGAATCGGGTAACTCCGAATCACATGGTGTTGGTTCAAGCGTTCAGATAGCCAAAAATATGCTTGCTGTCCGTGCATCTCAGGCCTTGTCGCGGC TTAGTGGGTTGTGTAATGATGAGAATGTAGCGCCTTTTAATACTTCAGCAGTTGATGCCCTCAGGGCGCTGCTAACTCCTAAACTTGCTAGCATGCTCAG AGATCAAATGCCAAAAGACTTATTGTCAAAATTGAACTCAAACTTGGAATCTCCAGAGATAATCTGGAACTCTGCCACTCGAGGAGAATTGCTAAAATTT GTTGATCAGCAACGTGCTAGTGCAGGCCCTGATGGTTCCTATGACCTGAAAGATTCACATTCCTTTTTCTATGACGCATTATCTAAAGAACTCTTTATTG GCAATGTTTACTTAAGGGTCTACAATGATCAGCCAGACTCTGACATCAGTGAGCCAGAAGTGTTCTGTGTTGCTCTAGTTGATTTCATATTATGTCTTGT GAGCAGTCAAACTAGTGGAGTTTCAGATGTTCAGAAGGAACTTAGTAGTCCAAGCAGTTCAACCTCAGAGACATCTGAGGTTCACAACCATCTTGCTGAT ACTGTAAATGGACAGCATTCACCTGATGATTCAACACCAGGCCTAATCTCCGTGTTAGATGAAAGTTCTACAGATAAGGAAGAATTAATGGTTAAGAATC TCCGATTCGCACTGATATCTCTGAAGAATTTGTTGACGAATAATCCAAGCTTAGCATCCATATTTTCTTCCAAAGAGAGGCTGTTACCTCTGTTTGAATG TTTCTCTGTGCCGATAGCATCAGAAAGCAACATTCCCCAACTTTGCCTGAGTGTGCTTTCCCTTTTGACTGCCTATGCTCCTTGCTTGGAAGCTATGGTT GCTGACGGATCTAGTCTTCTCCTCTTATTGCAAATGCTTCATTCTTCTCCGGGCTGCCGGGAGGGAGTGCTCCATGTTCTTTATGCTTTGGCCAGCACTG CAGAGCTCGCTTGGGCTGCTGCCAAGCATGGCGGGGTGGTCTACATTCTTGAACTTCTTTTGCCTGTTCAAAAAGAAATACCCTTACAGCAGAGAGCTGC AGCAGCTTCCTTACTTGCAAAGCTTGTTGGGCAGCCAATGCATGGTCCCAGAGTTGCTATAACACTGGCAAGGTTTTTACCAGATGGACTGGTATCAATT ATTAGGGATGGACCTGGTGAGGCTGTTGTATCTGCACTTGAACAGACAACAGAGACACCAGAGCTTGTGTGGACACCAGCAATGGCAGCATCTTTGTCTG CCCAAATTGCTACCATGGCATCAGACTTGTACCGGGAACAGATGAAAGGTCGTGTAGTCGATTGGGATGTGCCTGAGCAAACCTCTGGGCACCAAGAAAT GAAAGATGAACCACAGGTTGGTGGCATATATGTCAGGTTGTTCTTGAAAGATCCCAAATTCCCTCTAAGAAACCCTAAGAGATTCCTCGAAGGGCTACTT GATCAATACTTGTCATCCATTGCTGCGACTCATTACGAGACTCAAGTTGTTGACCCAGAGCTTCCTTTGCTTCTCTCCGCTGCTTTAGTTTCTCTGTTGC GAGTATACCCTGCACTTGCGGATCACGTTGGTTACCTTGGATATGTGCCCAAACTAGTAGCTGCAGTAGCTTATGAGGGAAGAAGGGAGACAATGGCTTC TGATGAGATGAACAATGGCAGCTATGCAGACACGGGAAGTGAATTTGACGAGGCATCCACCCCACCTGCTCAAACTCCTCAAGAGCGTGTGCGCCTTAGT TGCTTGCGTGTCTTACATCAGCTTGCATCAAGTACAATATGTGCTGAAGCTATGGCGGCAACTAGTGCTGGATCACCACAGGTTGTTCCACTTCTTATGA AAGCTATAGGATGGCAAGGTGGAAGTATACTAGCTCTTGAGACCTTGAAACGCGTTGTTGTTGCTGGAAATCGAGCCCGGGATGCACTGGTTGCCCAAGG ACTCAAGGTTGGTCTTGTGGAAGTACTTCTGGGAATTCTTGATTGGAGAGCTGGGGGACGAAACGGACTTCGCTCTCAGATGAAGTGGAATGAGTCTGAA GCATCTATCGGCACAGTTCTTGCAGTTGAGGTTTTGCATGCATTTGCAACTGAAGGAGCTCACTGTAGCAAAGTCCGGGATTTACTAGATTCGTCTGAGA TCTGGCATGCGTACAAAGACCAGAAACATGATCTCTTCCTTCCTTCGAGGGCTCAGTCTTCTGCAGCTGGCGTTGCAGGTCTGATAGAGAGTTCGTCGTC GAGATTAACGTATGCCATTATGGGTCCCCAAGCAAGCTCTCAAGGGAGCGGCAGACCACCAGCACCCAACAATCAGTTGTAG
AA sequence Show only first row Show all	>Lus10017748 pacid=23176351 polypeptide=Lus10017748 locus=Lus10017748.g ID=Lus10017748.BGIv1.0 annot-version=v1.0 MQGLQGPQLWRLLLLLKGQCILYRRYGYVLEPFKYAGYPMLLNAVTVDKDDNNFLSSDRAPLLVAASELIWLTCAASSLNGEELVRDGGIQLLAILLSRC MMVVQPTTCVNEPPATIVTNVMRTFSVLSQFESARAEILEVSGLIEDIVHCNELELMPEAGDAALQTIANLSVSFNLQNALLKAGVLWFLLPLLLQYDST AEESGNSESHGVGSSVQIAKNMLAVRASQALSRLSGLCNDENVAPFNTSAVDALRALLTPKLASMLRDQMPKDLLSKLNSNLESPEIIWNSATRGELLKF VDQQRASAGPDGSYDLKDSHSFFYDALSKELFIGNVYLRVYNDQPDSDISEPEVFCVALVDFILCLVSSQTSGVSDVQKELSSPSSSTSETSEVHNHLAD TVNGQHSPDDSTPGLISVLDESSTDKEELMVKNLRFALISLKNLLTNNPSLASIFSSKERLLPLFECFSVPIASESNIPQLCLSVLSLLTAYAPCLEAMV ADGSSLLLLLQMLHSSPGCREGVLHVLYALASTAELAWAAAKHGGVVYILELLLPVQKEIPLQQRAAAASLLAKLVGQPMHGPRVAITLARFLPDGLVSI IRDGPGEAVVSALEQTTETPELVWTPAMAASLSAQIATMASDLYREQMKGRVVDWDVPEQTSGHQEMKDEPQVGGIYVRLFLKDPKFPLRNPKRFLEGLL DQYLSSIAATHYETQVVDPELPLLLSAALVSLLRVYPALADHVGYLGYVPKLVAAVAYEGRRETMASDEMNNGSYADTGSEFDEASTPPAQTPQERVRLS CLRVLHQLASSTICAEAMAATSAGSPQVVPLLMKAIGWQGGSILALETLKRVVVAGNRARDALVAQGLKVGLVEVLLGILDWRAGGRNGLRSQMKWNESE ASIGTVLAVEVLHAFATEGAHCSKVRDLLDSSEIWHAYKDQKHDLFLPSRAQSSAAGVAGLIESSSSRLTYAIMGPQASSQGSGRPPAPNNQL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017748 [exp]	0	1
AT5G42220			Ubiquitin-like superfamily pro...		Lus10021830 [exp]	1.4	0.9014
AT4G02480			AAA-type ATPase family protein...		Lus10036347 [exp]	2.0	0.8962
AT1G04140			Transducin family protein / WD...		Lus10000495 [exp]	3.0	0.8830
AT5G12400			DNA binding;zinc ion binding;D...		Lus10014918 [exp]	4.9	0.8361
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10025635 [exp]	5.2	0.8335
AT1G73660			protein tyrosine kinase family...		Lus10031341 [exp]	5.7	0.8437
AT2G15900			Phox-associated domain;Phox-li...		Lus10027939 [exp]	5.9	0.8364
AT4G02480			AAA-type ATPase family protein...		Lus10010282 [exp]	7.4	0.8405
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10043135 [exp]	7.7	0.8327
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10028994 [exp]	8.7	0.8111

Compare expression of checked genes

Lus10017748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.