Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32600 173 / 3e-50 RING/U-box superfamily protein (.1) AT1G80400 150 / 2e-42 RING/U-box superfamily protein (.1) AT3G61180 112 / 5e-28 RING/U-box superfamily protein (.1) AT5G55970 110 / 1e-27 RING/U-box superfamily protein (.1.2) AT4G26580 109 / 2e-27 RING/U-box superfamily protein (.1.2) AT4G11680 109 / 5e-27 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT2G01735 101 / 2e-24 RIE1 RING-finger protein for embryogenesis (.1) AT1G68070 98 / 3e-23 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G12760 83 / 6e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) AT1G63170 83 / 1e-17 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033075 [exp] 543 / 0 AT4G32600 189 / 2e-56 RING/U-box superfamily protein (.1) Lus10011475 [exp] 183 / 1e-54 AT1G80400 459 / 9e-161 RING/U-box superfamily protein (.1) Lus10023112 [exp] 168 / 2e-48 AT1G80400 447 / 1e-155 RING/U-box superfamily protein (.1) Lus10013144 [exp] 159 / 4e-45 AT4G32600 477 / 2e-167 RING/U-box superfamily protein (.1) Lus10008106 [exp] 150 / 2e-42 AT4G32600 410 / 1e-141 RING/U-box superfamily protein (.1) Lus10022567 [exp] 112 / 3e-28 AT5G55970 418 / 1e-146 RING/U-box superfamily protein (.1.2) Lus10041359 [exp] 105 / 1e-25 AT3G61180 400 / 6e-139 RING/U-box superfamily protein (.1) Lus10036569 [exp] 101 / 5e-24 AT3G61180 387 / 1e-133 RING/U-box superfamily protein (.1) Lus10021801 [exp] 87 / 8e-19 AT1G68070 478 / 1e-169 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G247000 [exp] 182 / 7e-54 AT4G32600 498 / 1e-175 RING/U-box superfamily protein (.1) Potri.018G034400 [exp] 180 / 3e-53 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.001G371200 [exp] 114 / 5e-29 AT5G55970 424 / 3e-149 RING/U-box superfamily protein (.1.2) Potri.011G094800 [exp] 109 / 3e-27 AT5G55970 412 / 1e-144 RING/U-box superfamily protein (.1.2) Potri.008G134900 [exp] 106 / 3e-26 AT1G68070 392 / 2e-136 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.014G075000 [exp] 100 / 7e-24 AT3G61180 315 / 1e-105 RING/U-box superfamily protein (.1) Potri.002G155200 [exp] 97 / 1e-22 AT3G61180 366 / 3e-125 RING/U-box superfamily protein (.1) Potri.003G123300 [exp] 86 / 2e-18 AT1G12760 400 / 7e-138 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) Potri.010G106300 [exp] 84 / 3e-18 AT1G68070 412 / 2e-144 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.010G243200 [exp] 62 / 2e-11 AT5G06490 138 / 2e-41 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10017750 pacid=23176312 polypeptide=Lus10017750 locus=Lus10017750.g ID=Lus10017750.BGIv1.0 annot-version=v1.0 ATGGAGCCGCAGCAGCTGGACGAAAGACATCAAAATCCCAGTCACGTTGTTCACATAACCGAACATTCAAATGGTTTGGAGTCAATCCATGGTGAAGATA TTAGGATGGCAACTGCTGCTGAGGCACCTGCTCCTCAATCTTGTTCATCTTCTGGTAGTACATCCAACGCTGCCGCACATTCTTCAGCTTTCCCGTCTTA CTACAAAATTCTGGTTTCCATCAAGCTATCCTACAATGCCATCCTCATTATTGCGTCCACCATTGTCTTGATTCTGTCGAGACATGAGAGGCCGTCCAAT CCGTTGTTTGCTTGGGTTGTTGGTTATACAATCGGATGTGTTGCTAGTATTCCTGTGACTTTCAGACATTGTTTCCTTCCTCATCCTAGGCTCTGTAGAG TGATTGACCAAATTAAGCTGGCACTGGAATTGTTTTATGCATCTTGGTTCATGGTTGGCAATTACTGGGTCTTTACTGAAAGATCATCTAATGCGGCCCA CAGATTATACAGCCATTGCATCGCTCTTGTTGTCCTTAGCTACGTGAAGTATGTTGGGCCATTCATTCTGCAGGCTTTGGTTGTTTGCTGCTGCAGAGGT TTCCTAAATCCAATTGTAGGGGCCCCTGTAGAAACCATAGATGCCCTTCCAATCTACAAATTCAAGTCGCTTAAAACAAGTGGTTCTTGTGGGGAACATG ATGGAGAAACACATGGTGGTGGAGTTGTGGGAGCAGGATCTGAGAGGGAACGTAATCTTTGCGGTGACGATGCTGCTTGTTGCATTTGCTTGGCAACTTA TGGAGATGATGATGAACTAAAAGAGCTTCCTTGTTCTCATCTGTTTCATGCAAGTTGCGTGGATATATGGCTTAAGCTTAAGGCATTTTGTCCACTGTGC AAATGCAGGATTGATAGGGCCATAGCTAATCTCCCTTCAGCAACGACCCCAGTTCAGTAA
AA sequence Show only first row Show all	>Lus10017750 pacid=23176312 polypeptide=Lus10017750 locus=Lus10017750.g ID=Lus10017750.BGIv1.0 annot-version=v1.0 MEPQQLDERHQNPSHVVHITEHSNGLESIHGEDIRMATAAEAPAPQSCSSSGSTSNAAAHSSAFPSYYKILVSIKLSYNAILIIASTIVLILSRHERPSN PLFAWVVGYTIGCVASIPVTFRHCFLPHPRLCRVIDQIKLALELFYASWFMVGNYWVFTERSSNAAHRLYSHCIALVVLSYVKYVGPFILQALVVCCCRG FLNPIVGAPVETIDALPIYKFKSLKTSGSCGEHDGETHGGGVVGAGSERERNLCGDDAACCICLATYGDDDELKELPCSHLFHASCVDIWLKLKAFCPLC KCRIDRAIANLPSATTPVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32600			RING/U-box superfamily protein...		Lus10017750 [exp]	0	1
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10009891 [exp]	1.0	0.8855
AT3G03940			Protein kinase family protein ...		Lus10024261 [exp]	3.0	0.8055
AT1G10390			Nucleoporin autopeptidase (.1....		Lus10008288 [exp]	4.7	0.8162
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10039472 [exp]	8.8	0.7935
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10002454 [exp]	11.2	0.7954
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10031939 [exp]	12.7	0.7951
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10033335 [exp]	12.8	0.8020
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10024391 [exp]	15.2	0.7880
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Lus10033232 [exp]	17.7	0.7570
AT3G59910			Ankyrin repeat family protein ...		Lus10010581 [exp]	18.3	0.7910

Compare expression of checked genes

Lus10017750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.