Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25510 627 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT4G15415 504 / 4e-175 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G21650 502 / 3e-174 Protein phosphatase 2A regulatory B subunit family protein (.1) AT1G13460 498 / 2e-173 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G26020 493 / 4e-171 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT3G09880 492 / 8e-171 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G03470 482 / 6e-167 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26030 447 / 1e-153 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1) AT3G54930 432 / 2e-147 Protein phosphatase 2A regulatory B subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010426 [exp] 864 / 0 AT5G25510 608 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10033069 [exp] 844 / 0 AT5G25510 529 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10012116 [exp] 840 / 0 AT5G25510 598 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10013141 [exp] 613 / 0 AT5G25510 780 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10008104 [exp] 580 / 0 AT5G25510 723 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10015144 [exp] 521 / 0 AT4G15415 753 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10030002 [exp] 515 / 8e-180 AT4G15415 763 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10035321 [exp] 512 / 1e-178 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10031536 [exp] 507 / 4e-176 AT3G26020 724 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G073925 [exp] 785 / 0 AT5G25510 609 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G247100 [exp] 625 / 0 AT5G25510 800 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.018G034200 [exp] 618 / 0 AT5G25510 809 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.014G157000 [exp] 523 / 0 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.002G226200 [exp] 522 / 0 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.010G054300 [exp] 518 / 2e-180 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G180000 [exp] 511 / 3e-178 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G179900 [exp] 507 / 2e-176 AT3G26020 731 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.017G070100 [exp] 507 / 2e-176 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.016G098400 [exp] 505 / 3e-176 AT3G09880 743 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01603 [flax] [poplar] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Lus10017752 pacid=23176332 polypeptide=Lus10017752 locus=Lus10017752.g ID=Lus10017752.BGIv1.0 annot-version=v1.0 ATGCTCAAGCAAATTCTTAGTAAAATTCCCCGCAAGTCTCCAAAATCTGACCAACTAGAGGCCACAGTGATTAATGATAGTGGCAATCCTCCAAACTTGG GCAATGGAGCTCCCTGTACCAATGGAGGAAACTCGTTTTCGAGTCGGTTGAATGTTGTGAAGAGGGTATCCTCGGCCGTTTTCCCTTCGAGCATTATGGC AGGAGTTGATGCTGTGGATCCCCATCTATCCTTCAAGGATGTTTCTTCAGCTGCACAGAAACAGAATCTGTTTGTTAGTAAACTAAACCTGTGCTGTGAG ACTCCTAATTATAGTGATCCGGACAAGACCGATGCCCAGGTAGATCTTAAACGAGAAGCATTGGTGGAGCTTGTTGATTTTGTTTCTTCAGGATCAGCAA AGTTCACTGAACCAGCCATTGTAGCAATGTGTAAGATGTGTGCAACAAACCTTTTCAGGGTCTTCCCTCCTAAGTATCGCTCCAGTGGTGGAGAAACTGA AGATGAAGAGCCAATGTTTGATCCTGCTTGGTCATATTTACAAATTGTATACGATCTGCTACTTCGTTTCACAAGTTTAGTGGATGCAAAGATGGCAAAG AAGCATGTAGATCATGCTTTTGTTTTGAGAGTACTTGACCTATTTGATTCTGATGATCCAAGAGAACGGGAATGTTTGAAAACTGTTCTACATAGGATTT ATGGAAAATTCATGGTACACAGGCCCTTCATAAGAAAAGGTGTCAGCAATATCATCTACCGGTTTGTGTATGAGACTGAACGGCATAATGGAATTGCTGA GCTATTGGAGATCTTCGGTAGCATTATTAGCGGGTTTGCTCTACCTTTGAAGGAAGAGCACAAGTTATTTCTGTGGAGGGCTTTGTTGCCTCTACATAAA CCGAAATCGGTTGGCATATATCATCAACAGTTAACATTTTGTGTTGTGCAGTTTGTGGACAAGGATCCCAAATTGGCTGCTTCAGTGATCAAAGGCCTAT TGAAGTACTGGCCTGTGACCAACAGCCAAAAGGAGTTGATGTTTATAAGTGAGCTAGAAGAGATTTTGGAAATGACCAGCATGGACGAGTTTCACAAGGT CATGGTGCCATTGTTTCGCCGAATAGGGGCTTGTCTCAATAGTTCTCATTATCAGGCACGCACTATTCTTGAAGTGGCAGAACGAGCTCACTTGCTATGG AACAACGAGCGGATTGTGAACCATCTTATTGTACAGAATCGGCAGGTGATTATGCCGATAATCTTCTCAGCTCTGGAACACAACAGTCAGAACCACTGGA ACCAAGCAGTTCTGAACCTGACACAGTACATAAGGAAGATATTCCTGGAGATGGACGAGGAGCTAATGATGGCGTGCCAGCGCAAGTCGGAGGAAGAACA ATCGAAGCCAAATGTGGTGGCAGAGAAGAGGAGATTAACCTGGGAAAACTTGGAAAATGCTGCTGGAACAGAAGTGGTAAATATGGCTGCCTGCCTCAGT TCTAAAAGGATTGCATGGGATGCAATGGCGGCGGAGGTGGTGCAACTGGAGGAGCCCCTTAAGCTTGCTTTTTAG
AA sequence Show only first row Show all	>Lus10017752 pacid=23176332 polypeptide=Lus10017752 locus=Lus10017752.g ID=Lus10017752.BGIv1.0 annot-version=v1.0 MLKQILSKIPRKSPKSDQLEATVINDSGNPPNLGNGAPCTNGGNSFSSRLNVVKRVSSAVFPSSIMAGVDAVDPHLSFKDVSSAAQKQNLFVSKLNLCCE TPNYSDPDKTDAQVDLKREALVELVDFVSSGSAKFTEPAIVAMCKMCATNLFRVFPPKYRSSGGETEDEEPMFDPAWSYLQIVYDLLLRFTSLVDAKMAK KHVDHAFVLRVLDLFDSDDPRERECLKTVLHRIYGKFMVHRPFIRKGVSNIIYRFVYETERHNGIAELLEIFGSIISGFALPLKEEHKLFLWRALLPLHK PKSVGIYHQQLTFCVVQFVDKDPKLAASVIKGLLKYWPVTNSQKELMFISELEEILEMTSMDEFHKVMVPLFRRIGACLNSSHYQARTILEVAERAHLLW NNERIVNHLIVQNRQVIMPIIFSALEHNSQNHWNQAVLNLTQYIRKIFLEMDEELMMACQRKSEEEQSKPNVVAEKRRLTWENLENAAGTEVVNMAACLS SKRIAWDAMAAEVVQLEEPLKLAF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25510			Protein phosphatase 2A regulat...		Lus10017752 [exp]	0	1
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10024604 [exp]	3.5	0.8753
AT3G12110		ACT11	actin-11 (.1)		Lus10004169 [exp]	4.0	0.8582
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10002273 [exp]	6.5	0.8385
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10042211 [exp]	9.2	0.8477
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10013238 [exp]	9.8	0.8577
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10041363 [exp]	11.3	0.8382
AT3G16060			ATP binding microtubule motor ...		Lus10037546 [exp]	12.2	0.8509
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10022176 [exp]	12.5	0.8329
AT2G27060			Leucine-rich repeat protein ki...		Lus10026756 [exp]	12.5	0.8476
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Lus10020120 [exp]	14.5	0.8374

Compare expression of checked genes

Lus10017752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.