Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19930 362 / 2e-126 Protein of unknown function DUF92, transmembrane (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033068 [exp] 451 / 1e-161 AT5G19930 380 / 9e-134 Protein of unknown function DUF92, transmembrane (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G073000 [exp] 378 / 7e-133 AT5G19930 381 / 3e-134 Protein of unknown function DUF92, transmembrane (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01940 [flax] [poplar] DUF92 Integral membrane protein DUF92
Representative CDS sequence Show only first row Show all	>Lus10017753 pacid=23176342 polypeptide=Lus10017753 locus=Lus10017753.g ID=Lus10017753.BGIv1.0 annot-version=v1.0 ATGAAGAAGATGTCCTTTGTTCAGCCATTCATTGCCATCTTAATCTCTTCCGCTGTCGCGGTCAGAGCTTACCGGAAGAACTCCCTTAACCTTTCCGGGG CAGTTGCTGGATTCCTTGTAATGACTCTTCACTTTGCGGTCAATTACAGGTTTGGTGTGATTCTGCTGGTCTTTTTCTTCAGTTCTTCGAAGCTCACCAA GGTTGGACAAGAGAAGAAGAAGCAAGTTGATGTTGATTTCAAGGAAGGTGGACAAAGAAACTGGATTCAAGTTATTTCTAATAGTGGAATTGCATCAGCG TTGGCTTTGATTCTATGGAATCTGAACGGGTCAGAGGACCAGTGCTTGGATACGAAACAGTCAACAACTATCATCACTGCTCTGATTGGTGGTATCCTTG GTCACTATTGCTGCTGTAATGGAGATACCTGGTCTTCTGAGCTTGGGGTACTCAGTGATGCACAACCGCGATTGATCACAACGTTCAAGCATGTTCGGAA GGGTACAAATGGTGGGGTTACAAATGCTGGACTCGTAGCAGCTGCAGCTGCAGGTGGTGTCATCGGACTTGCATTCATGCTCTTTGGATTCCTGACGACA AAATGCACTCTTGAAGTTGCTCTGAAGCAGCTATTAGTTATACCTCTTTCTGCAGCAGCTGGTCTTTGTGGAAGTTTGATAGATTCTATTCTTGGAGCCA CACTGCAGTTCAGTGGATTCTGCACTGTTCGTAACAAAGTTGTCGGGAAACCAGGACCAACAGTGAAGAGAATTTCAGGGATCCGCATTCTGGACAACAA CGCAGTGAACTTTGTATCCGTGCTACTGACCTCTGTGCTAACTTCCTTTGCTTGTACCTATATCTTTTGA
AA sequence Show only first row Show all	>Lus10017753 pacid=23176342 polypeptide=Lus10017753 locus=Lus10017753.g ID=Lus10017753.BGIv1.0 annot-version=v1.0 MKKMSFVQPFIAILISSAVAVRAYRKNSLNLSGAVAGFLVMTLHFAVNYRFGVILLVFFFSSSKLTKVGQEKKKQVDVDFKEGGQRNWIQVISNSGIASA LALILWNLNGSEDQCLDTKQSTTIITALIGGILGHYCCCNGDTWSSELGVLSDAQPRLITTFKHVRKGTNGGVTNAGLVAAAAAGGVIGLAFMLFGFLTT KCTLEVALKQLLVIPLSAAAGLCGSLIDSILGATLQFSGFCTVRNKVVGKPGPTVKRISGIRILDNNAVNFVSVLLTSVLTSFACTYIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19930			Protein of unknown function DU...		Lus10017753 [exp]	0	1
AT1G51730			Ubiquitin-conjugating enzyme f...		Lus10006873 [exp]	1.0	0.8855
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10000601 [exp]	1.4	0.8778
AT1G05785			Got1/Sft2-like vescicle transp...		Lus10019570 [exp]	2.0	0.8514
AT3G27100			unknown protein		Lus10012534 [exp]	2.4	0.8584
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10035437 [exp]	4.9	0.8429
AT5G60335			Thioesterase superfamily prote...		Lus10009162 [exp]	6.0	0.8358
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10016510 [exp]	6.7	0.8448
AT2G36410			Family of unknown function (DU...		Lus10023876 [exp]	7.5	0.8402
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Lus10005480 [exp]	8.5	0.8373
AT3G27050			unknown protein		Lus10035208 [exp]	9.5	0.8222

Compare expression of checked genes

Lus10017753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.