Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32551 686 / 0 RON2, LUG ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) AT2G32700 375 / 7e-117 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) AT2G41500 97 / 1e-20 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT4G02730 91 / 2e-19 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 88 / 1e-17 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 88 / 1e-17 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G33340 82 / 7e-16 MAC3B MOS4-associated complex 3B (.1.2.3) AT3G49660 79 / 2e-15 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G04510 79 / 6e-15 MAC3A MOS4-associated complex 3A (.1.2) AT5G67320 77 / 4e-14 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033066 [exp] 1234 / 0 AT4G32551 746 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Lus10043135 [exp] 368 / 3e-114 AT2G32700 1073 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10032614 [exp] 367 / 9e-114 AT2G32700 1073 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10022797 [exp] 338 / 2e-103 AT2G32700 903 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10011863 [exp] 328 / 2e-98 AT2G32700 909 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10021059 [exp] 108 / 3e-24 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 104 / 8e-23 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10014674 [exp] 97 / 2e-21 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 96 / 4e-21 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G248100 [exp] 702 / 0 AT4G32551 996 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Potri.018G033300 [exp] 659 / 0 AT4G32551 657 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Potri.001G049400 [exp] 389 / 3e-122 AT2G32700 1057 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.003G178600 [exp] 384 / 3e-120 AT2G32700 1051 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.002G241800 [exp] 360 / 2e-111 AT2G32700 899 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.004G045601 [exp] 290 / 2e-86 AT2G32700 354 / 1e-111 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.002G051900 [exp] 97 / 2e-21 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 99 / 3e-21 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.019G087200 [exp] 84 / 6e-17 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.007G050100 [exp] 85 / 1e-16 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0561 [flax] [poplar] LisH PF08513 [flax] [poplar] LisH LisH
Representative CDS sequence Show only first row Show all	>Lus10017754 pacid=23176306 polypeptide=Lus10017754 locus=Lus10017754.g ID=Lus10017754.BGIv1.0 annot-version=v1.0 ATGTCTCAGACGAACTGGGAAGCTGATAAAATGCTGGATGTCTATATATATGATTACCTTGTAAAGAGGAAGTTGGATGCTTCTGCCAAGGCATTCCAAG CTGAAGGCAAAGTGTCAACTGACCCTGTTGCTATCGATGCACCTGGAGGTTTTCTTTTCGAATGGTGGTCTGTGTTCTGGGACATCTTCATTGCAAGGAC CAACGAAAAGCATTCAGAAGCTGCTGCCTCTTATATTGAGGAAAATAGCAAAAAATATGGACAGAGTTTTGTTTTCATGTTTGGCTTTCTTGTGTATTTG ATGCTACTTCGAATTTGTTTCCTGACTTATGTTGGAGGTGATTTCATTTGTTTGATTACTTTTGAAAATGCTCCGAAACCTTATGTGGTTAAGTATTTGG AACTTCAGACACAATTAGCTAATGCTAGGGAACGACAACAGCCCAAGACTCAGCAGCAGCAGCAACAACAACAACAGATACAGATGCAGCAGCAGCAGCA ACAACAGCAACAGCAGCAGCAGATACAGATGCAGCAACAGCAGCAGATGCAGCAGCTGCTACTGCAGAGACATGCACAGCAGCAACAGCAGCAGCGAAGA GATGGAAACCCGAATCCAAATGCATCGGCAAATTCTCTTGCTGGTAATGAAGTTCCAAGACAGGCGTCTGCAACTGCCAGTGCTATGGCTACAAAATTGT ATGAGGATAAGCTGAAACTTCCGCTTCAAAGAGAGTCCCTAGAGGATACTGCTATGAAGCAAAGATTAAGTGATAGCATGGGACAATTTATTGATCCAAA CAACGCAGCCTTGCTGAAGGCAGTCGCCTTAGGAAGCCAACCTCAAGGTCAAACTATGCACGGTGCAGCTGGAAGTTCGGGAAATCTCCAACATTCTCAG AACCGTAATCAGCAATCACCTATGTCCTCCCAGGACATAAAGAGTGAGATGATTCAAATGATGAGTCCTAGGTCTTCTGCTGCAGAAGGGTCCTTGGTTG GAGCTCATGGACTAAATCAAGGAGGGAGCAATTTGACTCTGAAAGGATGGCCTTTGACGGGGTTGGATCAATTTGGGCTTCTTCAGCATCAAAGGTTGAT GCAGAGCACTCAGCACCTCAACAAAGCCCAATTGCAACAACAATTACTCTATCAAGCACAACAAAACTTGTCATCACCATCTGTGAGCGATATAGAACGT GGAAAGTTGAGAATACTTCTCGGTCAACAGAATATAGGTATTTCAAAGGAAGGGCCATTAAGTTCTGGCGACATGCTTAGTAACATTGGATCACCAATGC AGGTTGGTTCCCATTTAATGCCCCGAGACACTGATATGCTATTTAAGCAGCAACAACTTCAGAACACCAACCAACAACAGTACTCACAACATCCACTGTC AAGTCAACAATCACAGAATTCAAATCACACGTTCCAGCAGCAAGAGAAATTGATTGGTTCAGGAAGCATGACAGCAGATGGTAGTATGTCAAACACCTTT CAAGGAACGGACCAGGGTACAAAAAGTCTAGTGGGAAGAAAGAGAAAGCAGGCTGTATCATCTTCAGGTCCAGCCAATAGTTCAGGGACTGCAAACACCA CCGGCCCATCACCAAGTTCTCCATCGACACCTTCCACTCACACACCTGGAGATGCTATGTCGATGCCTAGTGCACCTCAAAATGCTAATTCCTCGAAGTC TATGCTTATGTTTGGCTCTGATGGTCTGGGATCCCTTGCACCAGCTTCAAATGATTTAGCTGAGATGGATCGGATCCTAGATGATAGAACTCTTGATGAA AATGTCGAATCTTTCTTCTCACATGATGCTGGGGATCCTAGGGACAGAGGTGGTCTGTCTTCTGATGTCACTAAAGGATTCACATTTTCGGAGATCCGGG TTTTACCTGCTAGTACAAGTAAGGTTGAGTGCTGTCATTTCTCATCCGATGGAAAACTGCTCGCAACTGGTGGACATGACAAAAAAGTTACACTCTGGGG CACAGAATCTTTCACAGTGAATTCGACGTTTGAAGAACATTCTCAGTGGATTACTGATGTCCGTTTCAGCCCAAGCATGTCAAGGCTTGCTACATCTTCT GCCGATAAAACTGTTAGAGTTTGGGATGCTGATAATCCTGGATATTCACTTCGTACGTTCACTGGACATTCTACAACTGTTATGTCGGTGGATTTCCACC CTACTAAGGAGGACCTTATATGTTCTTGTGATAGTAATAATGAGATGCGCTACTGGAGTATCAAGAACGGTTGTGCTGGAGTTTTCAAGAGTGCTATGAA GATGAGATTTCAACCACGCCATGGAATGGTCCTTGCAGCAGCAGCTGAAAATTTGGTTTACATACTGGACGTTGATTCTCAAGTTGTCCGACTCAAACTG CAGGGTCATAAAAGTGCAGTGAACTCGGTGTGTTGGGACCCTTCTGGAGAGTATCTTGCTTCAGTGAGCGATGACTTGGTAAGAGTATGGAATATCGGGT CAGGGAGCAGAGGGGAGTACAGTCACGAGTTAAGCAGCTCAGGCAACAAGTTTAACACTTGTGCATTTCATCCTACCTATCCATCAGTCCTAATCGTTGG ATGTTACGAGACGCTAGAATTGTGGAACATGGCGGAGAACAAGACAATGACGATTCAAGCACACGAGAAGAGAGTCTCTGCCTTAGCGGTATCAGGTGCA AGTGGATTGGTAGCTTCAGCAAGCCATGACATGCATGTCAAACTCTGGAAGTGA
AA sequence Show only first row Show all	>Lus10017754 pacid=23176306 polypeptide=Lus10017754 locus=Lus10017754.g ID=Lus10017754.BGIv1.0 annot-version=v1.0 MSQTNWEADKMLDVYIYDYLVKRKLDASAKAFQAEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEAAASYIEENSKKYGQSFVFMFGFLVYL MLLRICFLTYVGGDFICLITFENAPKPYVVKYLELQTQLANARERQQPKTQQQQQQQQQIQMQQQQQQQQQQQQIQMQQQQQMQQLLLQRHAQQQQQQRR DGNPNPNASANSLAGNEVPRQASATASAMATKLYEDKLKLPLQRESLEDTAMKQRLSDSMGQFIDPNNAALLKAVALGSQPQGQTMHGAAGSSGNLQHSQ NRNQQSPMSSQDIKSEMIQMMSPRSSAAEGSLVGAHGLNQGGSNLTLKGWPLTGLDQFGLLQHQRLMQSTQHLNKAQLQQQLLYQAQQNLSSPSVSDIER GKLRILLGQQNIGISKEGPLSSGDMLSNIGSPMQVGSHLMPRDTDMLFKQQQLQNTNQQQYSQHPLSSQQSQNSNHTFQQQEKLIGSGSMTADGSMSNTF QGTDQGTKSLVGRKRKQAVSSSGPANSSGTANTTGPSPSSPSTPSTHTPGDAMSMPSAPQNANSSKSMLMFGSDGLGSLAPASNDLAEMDRILDDRTLDE NVESFFSHDAGDPRDRGGLSSDVTKGFTFSEIRVLPASTSKVECCHFSSDGKLLATGGHDKKVTLWGTESFTVNSTFEEHSQWITDVRFSPSMSRLATSS ADKTVRVWDADNPGYSLRTFTGHSTTVMSVDFHPTKEDLICSCDSNNEMRYWSIKNGCAGVFKSAMKMRFQPRHGMVLAAAAENLVYILDVDSQVVRLKL QGHKSAVNSVCWDPSGEYLASVSDDLVRVWNIGSGSRGEYSHELSSSGNKFNTCAFHPTYPSVLIVGCYETLELWNMAENKTMTIQAHEKRVSALAVSGA SGLVASASHDMHVKLWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10017754 [exp]	0	1
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10020235 [exp]	2.2	0.8902
AT3G23900			RNA recognition motif (RRM)-co...		Lus10043159 [exp]	2.4	0.8880
AT1G19485			Transducin/WD40 repeat-like su...		Lus10018573 [exp]	3.7	0.8564
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10023537 [exp]	4.8	0.8450
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10003491 [exp]	4.9	0.8838
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10041229 [exp]	5.3	0.8813
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10027219 [exp]	6.7	0.8748
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10030562 [exp]	6.9	0.8651
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10004188 [exp]	8.4	0.8696
AT2G44980		ASG3	ALTERED SEED GERMINATION 3, SN...		Lus10028186 [exp]	9.5	0.8560

Compare expression of checked genes

Lus10017754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.