Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26730 781 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 590 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT3G08680 528 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT3G02880 476 / 5e-161 Leucine-rich repeat protein kinase family protein (.1) AT5G05160 472 / 5e-159 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT5G16590 464 / 3e-156 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT1G64210 424 / 3e-141 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 410 / 2e-135 Leucine-rich repeat protein kinase family protein (.1) AT4G23740 392 / 3e-128 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 368 / 2e-118 leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033065 [exp] 971 / 0 AT2G26730 768 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021673 [exp] 589 / 0 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 588 / 0 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10019113 [exp] 572 / 0 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 566 / 0 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10014943 [exp] 486 / 1e-164 AT4G23740 634 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027568 [exp] 485 / 3e-164 AT4G23740 652 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10039321 [exp] 475 / 1e-160 AT4G23740 649 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038828 [exp] 475 / 3e-160 AT4G23740 613 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G074300 [exp] 882 / 0 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 596 / 0 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 595 / 0 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 560 / 0 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.012G033200 [exp] 514 / 6e-176 AT4G23740 656 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G023500 [exp] 509 / 2e-173 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G139200 [exp] 421 / 3e-139 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G095200 [exp] 394 / 6e-129 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044600 [exp] 392 / 4e-128 AT1G48480 719 / 0.0 receptor-like kinase 1 (.1) Potri.003G136100 [exp] 391 / 5e-128 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10017756 pacid=23176337 polypeptide=Lus10017756 locus=Lus10017756.g ID=Lus10017756.BGIv1.0 annot-version=v1.0 ATGGCGAGAGTTTCTGTATCACTAGCTTTGTTTCTCTTGGCAATGGTGCTGCTCAACAATGGTGGAGCGATGGCGGAACCATTGGAGGACAAGCAAGCTC TCCTTGCTTTTATCTCGAAGATCCCTCACGGATTTCGCCTTCAGTGGAACCAGAGCGCTTCGGCTTGCGGCTGGGTTGGAGTCGGATGCGACGCTAATCA GTCCGCCATCCACACTCTCCGTCTCCCGGGAGCTGACCTAGTGGGGCCGATTCCGCCAAACACTCTGGGGAAGCTTTCGCAGCTCAGAGTGTTGAGCCTC CGCTCCAACCGTTTGTCCGGTGAGATCCCGCCCGATTTCTCCAATTTGACTTTCCTCCGCAGCCTCTACTTGCAGAACAACGCCTTCTCCGGCGGGTTCC CAGCCAGTGTGACTCGCTTGACCAGGCTGGCTCGTCTTGACCTCTCGTCCAACAACTTCACTGGTCCTATCCCGTTCTCCGTCAACAATTGGACTCAATT GACCGGCCTGTTTTTAGAGAACAACCGATTTTCTGGTCCTTTGCCTAGCATCTCTTCCAATTTGGCAGGGTTCAATGTCTCGAACAACAATCTCAACGGC TCAATCCCTAGAAATCTGCAGAGATTCCCTGTAACAGCTTTTTCCGGGAATTTAGATCTGTGCGGTGGACCATTGCCGCCCTGCACTCCGTTCTTTCCTT CTCCGAGTCCAGCTCCTTCAACGATTGAACCAGTCCTCCCAACTCACAAGAAATCGAAAAAGCTCTCCACCTTAGCTATTGTTCTAATCTCAGTCGGTGG AGCCCTAGCCCTCTTTTTACTCCTCCTTTTGCTCCTCTGCTGCCTCCGGAAGAAAAAGAGGCAACAGTCTCCAAAACCACCAAAGCCAGTTGGCGCCGCA CGCTCCGTGCCGGTGGAAGCAGGGACGTCATCGTCGAAGGACGACATCACCGGCGCGTCGGCGGACGTGGAGAGGAACAAGCTAGTGTTCTTCGAAGGGG GAGTCTACAGCTTCGACCTAGAAGATCTGTTGAGAGCTTCGGCAGAGGTTCTAGGGAAAGGAAGCGTCGGAACATCGTACAAGGCGGTGTTGGAAGACGG GACGACGGTGGTGGTGAAGCGGCTGAAGGACGTGGCGGTGACGAAGAAGGAGTTCGAGATGCAAATGGAAGTGATAGGGAAGATTAAGCACGGAAATGTA GTACCGCTTAGGGCGTTTTACTTCTCCAAAGATGAGAAGCTCATCGTCTCCGATTACATGGCCGCCGGCAGCTTGTCCGCTCTTCTCCACGGCAGCAGAG GTTCAGGGAGAACCCCATTGGACTGGGACAGCAGAATGAAGATAGCAGTGAGCTCAGCAAAGGGGATAGCCGACCTCCACGCAGCTGGTAAAGTCTCTCA CGGGAATATCAAATCGTCCAACATCCTCCTCCGCCAGGACCATGAAGGTGCAGTCTCCGACTACGGTCTAAACCCTCTGTTTGGCACATCAACCCCTCCC AGCAGAGTAGCAGGCTACCGTGCCCCCGAGGTAGTCGAGACTCGTAAGGTGACATTCAAGTCGGATGTCTACAGCTTTGGCGTTCTCCTCCTGGAGCTCC TGACGGGTAAAGCCCCTAACCAGGCGTCCCTAGGGGAGGAAGGGATCGACCTGCCGCGATGGGTGCAGTCGGTGGTGCGAGAGGAGTGGACAGCAGAGGT GTTTGACGTAGAGCTAATGAGATATAACAACATTGAGGATGAGATGGTCCAGCTGCTTCAGATCGCAATGACATGTGTGTCGACTGTGCCTGATCAGAGG CCGGAGATGGCGGAAGTGGTGCGGATGATGGAGGAAATTAACAGAGGTGAGACAACCGACGACGGGCTTCGGCAATCGTCCGATGATCCTTCCAAAGGGT CGGATGGGCAGACTCCTATTGATAACAGGCCCACTCCTACGAGTACCAGCGCCGTGACGCCATAA
AA sequence Show only first row Show all	>Lus10017756 pacid=23176337 polypeptide=Lus10017756 locus=Lus10017756.g ID=Lus10017756.BGIv1.0 annot-version=v1.0 MARVSVSLALFLLAMVLLNNGGAMAEPLEDKQALLAFISKIPHGFRLQWNQSASACGWVGVGCDANQSAIHTLRLPGADLVGPIPPNTLGKLSQLRVLSL RSNRLSGEIPPDFSNLTFLRSLYLQNNAFSGGFPASVTRLTRLARLDLSSNNFTGPIPFSVNNWTQLTGLFLENNRFSGPLPSISSNLAGFNVSNNNLNG SIPRNLQRFPVTAFSGNLDLCGGPLPPCTPFFPSPSPAPSTIEPVLPTHKKSKKLSTLAIVLISVGGALALFLLLLLLLCCLRKKKRQQSPKPPKPVGAA RSVPVEAGTSSSKDDITGASADVERNKLVFFEGGVYSFDLEDLLRASAEVLGKGSVGTSYKAVLEDGTTVVVKRLKDVAVTKKEFEMQMEVIGKIKHGNV VPLRAFYFSKDEKLIVSDYMAAGSLSALLHGSRGSGRTPLDWDSRMKIAVSSAKGIADLHAAGKVSHGNIKSSNILLRQDHEGAVSDYGLNPLFGTSTPP SRVAGYRAPEVVETRKVTFKSDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYNNIEDEMVQLLQIAMTCVSTVPDQR PEMAEVVRMMEEINRGETTDDGLRQSSDDPSKGSDGQTPIDNRPTPTSTSAVTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26730			Leucine-rich repeat protein ki...		Lus10017756 [exp]	0	1
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10030821 [exp]	2.0	0.8927
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10037423 [exp]	2.2	0.8972
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10005252 [exp]	2.4	0.8957
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Lus10003967 [exp]	3.0	0.8932
AT5G01020			Protein kinase superfamily pro...		Lus10036762 [exp]	5.2	0.8522
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10011089 [exp]	6.5	0.8877
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10000808 [exp]	8.4	0.8916
AT3G10290			Nucleotide-sugar transporter f...		Lus10042039 [exp]	8.5	0.8795
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10040886 [exp]	8.6	0.8438
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Lus10023779 [exp]	10.8	0.8518

Compare expression of checked genes

Lus10017756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.