Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19960 140 / 1e-38 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G39260 73 / 4e-16 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT2G21660 68 / 1e-13 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) AT3G23830 61 / 2e-11 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT5G61030 64 / 3e-11 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT3G47120 63 / 6e-11 C3HZnF RNA recognition motif (RRM)-containing protein (.1) AT4G13850 60 / 6e-11 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT3G26420 62 / 7e-11 ATRZ-1A RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT1G22330 62 / 1e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G53680 58 / 6e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023569 [exp] 74 / 2e-15 AT2G21660 147 / 8e-46 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10026344 [exp] 73 / 2e-15 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10042320 [exp] 73 / 2e-15 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10026343 [exp] 71 / 2e-14 AT4G39260 145 / 1e-45 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) Lus10040454 [exp] 71 / 4e-14 AT2G21660 148 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10042321 [exp] 67 / 5e-13 AT2G21660 121 / 2e-36 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10018227 [exp] 64 / 5e-11 AT3G47120 298 / 1e-99 RNA recognition motif (RRM)-containing protein (.1) Lus10002093 [exp] 64 / 9e-11 AT5G09880 600 / 0.0 Splicing factor, CC1-like (.1) Lus10002684 [exp] 61 / 3e-10 AT2G46780 228 / 1e-72 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G074100 [exp] 159 / 2e-45 AT5G19960 202 / 3e-62 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G155300 [exp] 76 / 2e-16 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.009G116400 [exp] 76 / 4e-16 AT2G21660 145 / 5e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.006G208500 [exp] 62 / 9e-12 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G160300 [exp] 61 / 1e-11 AT2G27330 98 / 1e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022280 [exp] 61 / 3e-11 AT3G20930 203 / 2e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.016G068300 [exp] 62 / 2e-10 AT3G52380 264 / 5e-87 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.015G057400 [exp] 61 / 2e-10 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.015G086500 [exp] 61 / 2e-10 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.006G202000 [exp] 61 / 2e-10 AT3G52380 270 / 2e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10017757 pacid=23176326 polypeptide=Lus10017757 locus=Lus10017757.g ID=Lus10017757.BGIv1.0 annot-version=v1.0 ATGACGGTAGATGAAGAAAACTCTATATACGTCGGCGGACTTCCTTACAGCGCCACCGAAGACACTCTTCGCAGAATTTTCGATTTCTACGGTGCAATTA TCGCCGTCAAGATTATTAATGACCGTTCCACTAGGGGAAAGTGCTACGGTTTTGTTACTTTCAGAAATCCCAGATCAGTCGTTGAAGCTATTGATGATAT GAATGGCAAGACTATTGATGGACGGGCTGTACGAGTAAACGGAGTGACAACTAGAGGTGGAAGACCAAATTTTGGGCGAGAACAACCTTTCCAACGTGAT GTAGAGAGACGAATGGACTGGGATGGTGGTCGAGATCGAGATAGGGATTATGATGATGATAGGGATAGATATCATGAAAGGTACAGTGATAGGTCAAGAG AACGTGATAGATCATGGGATGCTGATGAGGATAGGGAAAGAGAATATGAGCATGATCGTGATCGAGCAGCTGGAGATGGATACTTGAACAGAGATCAGAA GCAGGATAGAGTGGAGAATGAACAAGATCTAGGAAGGGCTGTTGATTGGAACTGGGAAGGAGGCCGTGATTCAGGTTCAATAGGCAGGGAGATGAATGGT CGAAATGATGTGAATAGAATTGCTGACAAGAATCAGTTCTCAAAGAATCCAAATGGGTCAACATACCGTGACAGATCTACCAGGGATATTTCATTTGAGC TAGGCGATGATTATAATGATGATGAGGTAAAGCGGGTGAAAGTGCAACTTGGGATATCAATCCGTAGGCATGAAGACCTTAAAATTGAGATATCGGTGAT GGAAGAAAGACTAGGAGGGGAACAGGAACTTGCGTTTGGTTTGCAGGAAAAAGCTAAGAAACTGGAAGATGCATTGGTTAGTGTAAAGAGGCGAACATCC CAGCGGAAAGCACAGTTGGCCAAGCTCCACAAGTGTTACATGCAAATGAAAGATTATACTGAAAGACTTAAAAGCACTGAACAGGAACTTCAGACTCTTG TTGACAGCACATTGATAGAAAGCGATATGGGCGATGAGCTTGCGATCTGA
AA sequence Show only first row Show all	>Lus10017757 pacid=23176326 polypeptide=Lus10017757 locus=Lus10017757.g ID=Lus10017757.BGIv1.0 annot-version=v1.0 MTVDEENSIYVGGLPYSATEDTLRRIFDFYGAIIAVKIINDRSTRGKCYGFVTFRNPRSVVEAIDDMNGKTIDGRAVRVNGVTTRGGRPNFGREQPFQRD VERRMDWDGGRDRDRDYDDDRDRYHERYSDRSRERDRSWDADEDREREYEHDRDRAAGDGYLNRDQKQDRVENEQDLGRAVDWNWEGGRDSGSIGREMNG RNDVNRIADKNQFSKNPNGSTYRDRSTRDISFELGDDYNDDEVKRVKVQLGISIRRHEDLKIEISVMEERLGGEQELAFGLQEKAKKLEDALVSVKRRTS QRKAQLAKLHKCYMQMKDYTERLKSTEQELQTLVDSTLIESDMGDELAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19960			RNA-binding (RRM/RBD/RNP motif...		Lus10017757 [exp]	0	1
AT3G05675			BTB/POZ domain-containing prot...		Lus10013580 [exp]	3.0	0.9023
AT1G13030			sphere organelles protein-rela...		Lus10006465 [exp]	3.7	0.8703
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10030738 [exp]	5.1	0.9016
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10013219 [exp]	6.5	0.8760
AT5G13240			transcription regulators (.1)		Lus10007961 [exp]	7.5	0.8942
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10031004 [exp]	8.8	0.8488
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10016956 [exp]	9.5	0.8646
AT3G23490		CYN	cyanase (.1)		Lus10042087 [exp]	9.8	0.8320
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10009155 [exp]	14.7	0.8779
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10016885 [exp]	15.7	0.8793

Compare expression of checked genes

Lus10017757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.