Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19980 466 / 5e-166 GONST4 golgi nucleotide sugar transporter 4 (.1) AT1G76340 319 / 1e-107 GONST3 golgi nucleotide sugar transporter 3 (.1) AT4G31600 76 / 2e-15 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) AT1G07290 73 / 3e-14 GONST2 golgi nucleotide sugar transporter 2 (.1) AT2G13650 61 / 2e-10 GONST1 golgi nucleotide sugar transporter 1 (.1.2.3) AT4G32272 51 / 5e-07 Nucleotide/sugar transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033058 [exp] 635 / 0 AT5G19980 492 / 2e-176 golgi nucleotide sugar transporter 4 (.1) Lus10017141 [exp] 550 / 0 AT5G19980 489 / 4e-175 golgi nucleotide sugar transporter 4 (.1) Lus10018311 [exp] 543 / 0 AT5G19980 478 / 8e-171 golgi nucleotide sugar transporter 4 (.1) Lus10034672 [exp] 315 / 4e-106 AT1G76340 489 / 3e-174 golgi nucleotide sugar transporter 3 (.1) Lus10037000 [exp] 310 / 7e-104 AT1G76340 549 / 0.0 golgi nucleotide sugar transporter 3 (.1) Lus10034674 [exp] 308 / 8e-104 AT1G76340 473 / 2e-168 golgi nucleotide sugar transporter 3 (.1) Lus10015806 [exp] 251 / 1e-81 AT1G76340 434 / 2e-153 golgi nucleotide sugar transporter 3 (.1) Lus10024126 [exp] 76 / 4e-15 AT2G13650 535 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Lus10005865 [exp] 76 / 5e-15 AT1G07290 521 / 0.0 golgi nucleotide sugar transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G071700 [exp] 508 / 0 AT5G19980 484 / 6e-173 golgi nucleotide sugar transporter 4 (.1) Potri.010G057600 [exp] 311 / 2e-104 AT1G76340 557 / 0.0 golgi nucleotide sugar transporter 3 (.1) Potri.008G177700 [exp] 306 / 1e-102 AT1G76340 540 / 0.0 golgi nucleotide sugar transporter 3 (.1) Potri.006G270700 [exp] 77 / 8e-16 AT4G31600 450 / 3e-160 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.007G106400 [exp] 76 / 3e-15 AT2G13650 513 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.005G062900 [exp] 73 / 4e-14 AT2G13650 534 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.018G009400 [exp] 72 / 4e-14 AT4G31600 447 / 3e-159 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.009G044000 [exp] 70 / 5e-13 AT1G07290 472 / 5e-167 golgi nucleotide sugar transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF08449 [flax] [poplar] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Lus10017759 pacid=23176345 polypeptide=Lus10017759 locus=Lus10017759.g ID=Lus10017759.BGIv1.0 annot-version=v1.0 ATGTCTGCAACTCGAGCAGATCCAACAAATCAGCTGGCCACGAGCAGCGTGGTGATAGGCTACGCTCTCTGCTCCAGTTTGCTCGCCGTGATTAACAAGT ACGCCATCACTAAATTCAACTACCCTGGACTCCTCACCTCCCTACAGTACTTGACATCCGCGCTTGGCGTCTGGGTTTTAGGCAAATTAGGGTTCTTGTA CCACGACGCCTTCAACCTCAACACTGCGAAGAAGTTCCTCCCAGCTGCCTTCGTTTTCTACCTCGCCATCTTCACCAACACCAATCTCCTCCGCCATGCT AATGTCGATACCTTCATCGTCTTCAGATCTCTAACTCCTCTCTTGGTTGCCATAGCAGATACTTTCTTCAGGAAACAGCCCATCCCATCCAGGCTTACTT TCTTGGCCCTGTTCGTCATTTTGGGAGGTGCTGTTGGTTATGTGGCTACTGATTCTTCTTTTACGCTCACTGCATATTCATGGGCTTTGGCTTATCTAGT GACAATCACATCTGAAATGGTTTACATCAAGCACATTGTGTCCAGCATTGGGTTAAACACTTGGGGTTTGGTGTTGTACAACAATCTGCTGTCTTTGATC ATCTCTCCAGTGTTTCTGGTTCTCACTGGGGAGTATACTGAAGTGTTTGATGCTTTAGGGAACGGTGGGGATTGGTTCAAAATTGATGCTTTCTCTGCAG TGGCATTGTCTTGTGTTTTTGGTGTCCTCATTAGTTTCTTTGGATTCGCTGCCAGGAAGGCGATATCTGCTACCGCCTTTACTGTGACTGGTGTTGTTAA CAAGTTCCTTACTGTTGTGATAAATGTGATGATCTGGGATAAGCATGCCACTCCCTTTGGCTTGCTTTGCCTCCTCTTCACGCTTTGTGGAGGGGTTCTC TATCAACAGTCTGTCACTCCGACTCGGATTGAGCCTGTCTCAACAAGACAGAAGGACAATGGAGAAAAGGATGCAGAGAATGGGTTGCTTATCGAGAGAA AGGAAGCTGCTGAAGATAAGTAG
AA sequence Show only first row Show all	>Lus10017759 pacid=23176345 polypeptide=Lus10017759 locus=Lus10017759.g ID=Lus10017759.BGIv1.0 annot-version=v1.0 MSATRADPTNQLATSSVVIGYALCSSLLAVINKYAITKFNYPGLLTSLQYLTSALGVWVLGKLGFLYHDAFNLNTAKKFLPAAFVFYLAIFTNTNLLRHA NVDTFIVFRSLTPLLVAIADTFFRKQPIPSRLTFLALFVILGGAVGYVATDSSFTLTAYSWALAYLVTITSEMVYIKHIVSSIGLNTWGLVLYNNLLSLI ISPVFLVLTGEYTEVFDALGNGGDWFKIDAFSAVALSCVFGVLISFFGFAARKAISATAFTVTGVVNKFLTVVINVMIWDKHATPFGLLCLLFTLCGGVL YQQSVTPTRIEPVSTRQKDNGEKDAENGLLIERKEAAEDK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10017759 [exp]	0	1
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Lus10041083 [exp]	2.0	0.8878
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10005560 [exp]	3.2	0.8904
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Lus10036408 [exp]	5.3	0.8323
AT3G46520		ACT12	actin-12 (.1)		Lus10029286 [exp]	5.7	0.8494
AT1G61900			unknown protein		Lus10020048 [exp]	6.3	0.8419
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10013695 [exp]	7.5	0.8655
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10038017 [exp]	8.5	0.8483
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10026774 [exp]	8.5	0.8588
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10008407 [exp]	11.0	0.8338
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10021177 [exp]	13.9	0.8549

Compare expression of checked genes

Lus10017759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.