Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11020 246 / 3e-82 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G22120 135 / 6e-39 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT1G50440 116 / 4e-32 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) AT4G32670 52 / 7e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G60580 41 / 0.0002 RING/U-box superfamily protein (.1.2.3.4) AT2G02960 40 / 0.0004 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033053 [exp] 358 / 2e-126 AT1G11020 457 / 2e-163 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10019687 [exp] 139 / 4e-40 AT2G22120 546 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10016426 [exp] 138 / 5e-40 AT2G22120 543 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10034832 [exp] 115 / 2e-30 AT1G50440 379 / 7e-131 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Lus10033381 [exp] 105 / 2e-27 AT1G50440 340 / 1e-117 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Lus10021482 [exp] 47 / 4e-06 AT5G60580 469 / 6e-163 RING/U-box superfamily protein (.1.2.3.4) Lus10022585 [exp] 46 / 5e-06 AT5G60580 474 / 1e-164 RING/U-box superfamily protein (.1.2.3.4) Lus10010011 [exp] 41 / 0.0002 AT1G02610 174 / 2e-54 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10025031 [exp] 41 / 0.0002 AT1G02610 178 / 6e-56 RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G154800 [exp] 296 / 5e-102 AT1G11020 406 / 4e-143 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.018G073400 [exp] 293 / 7e-101 AT1G11020 389 / 2e-136 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.005G081500 [exp] 139 / 3e-40 AT2G22120 521 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.007G085900 [exp] 137 / 3e-40 AT2G22120 388 / 4e-136 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G252900 [exp] 114 / 2e-31 AT1G50440 370 / 5e-131 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Potri.008G005800 [exp] 111 / 3e-30 AT1G50440 374 / 2e-132 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Potri.002G196600 [exp] 47 / 1e-06 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.014G121900 [exp] 47 / 2e-06 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G304100 [exp] 40 / 0.0008 AT4G34100 1553 / 0.0 RING/U-box superfamily protein (.1.2) Potri.009G013300 [exp] 40 / 0.0009 AT5G60580 492 / 3e-171 RING/U-box superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10017764 pacid=23176331 polypeptide=Lus10017764 locus=Lus10017764.g ID=Lus10017764.BGIv1.0 annot-version=v1.0 ATGAAAGCGGAAGTGCAGATGGAGCCAGCAGCAAGCGAGGATAATCATAGTGACTCCGATCCTCTACTACAAAATCAGGTGGATTCGTCTTTGTTGTCGC CAGGTAGTTCCAGCGAGATTACGAATCTTGATGATGTCGAGAACGGTTCCGTTCCTACTTGTCGCATTTGTCTCGAGAGCGATTGCGAACCAGGAGATGA GCTGATATCTCCATGCATGTGCAAAGGCACCCAGCAGTTTGTCCACCGTGTGTGCCTTGATCATTGGCGGGCAGTAAGGGAAGGATTTGCATTCTCCCAT TGCACTACTTGCAAAGCACAGTTTCATCTTCGAGTTGAACTGTTTGAGCAGAATTCTTGGCGTAAAGTAAAATTCAGGCTCTTTGTAACGAGAGATGTTC TTCTAGTATTTTTGGCCATACAAACAATGATTGCTGCTATGGGTGGCATTGCTTTCCTAATGGACAAAGATGGAGCCTTTAGGAATTCATTCAGTGATGG TTGGGACCGAATACTGTCTAAACATCCAATTCCCTTCTATTATTGTATAGGTGGTCGAGTCCATTGCAAATGA
AA sequence Show only first row Show all	>Lus10017764 pacid=23176331 polypeptide=Lus10017764 locus=Lus10017764.g ID=Lus10017764.BGIv1.0 annot-version=v1.0 MKAEVQMEPAASEDNHSDSDPLLQNQVDSSLLSPGSSSEITNLDDVENGSVPTCRICLESDCEPGDELISPCMCKGTQQFVHRVCLDHWRAVREGFAFSH CTTCKAQFHLRVELFEQNSWRKVKFRLFVTRDVLLVFLAIQTMIAAMGGIAFLMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGGRVHCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11020			RING/FYVE/PHD zinc finger supe...		Lus10017764 [exp]	0	1
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10022458 [exp]	4.0	0.9079
AT4G32480			Protein of unknown function (D...		Lus10017723 [exp]	5.7	0.8725
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10020070 [exp]	7.1	0.8996
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10016763 [exp]	7.3	0.8824
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10043309 [exp]	7.7	0.9144
AT5G05700		ATATE1, DLS1, A...	DELAYED LEAF SENESCENCE 1, arg...		Lus10004392 [exp]	9.7	0.8715
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10007656 [exp]	9.9	0.8737
AT1G11400		PYM	partner of Y14-MAGO (.1.2.3)		Lus10007180 [exp]	14.3	0.8630
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10013997 [exp]	14.8	0.8696
AT5G03560			Tetratricopeptide repeat (TPR)...		Lus10027932 [exp]	19.1	0.8870

Compare expression of checked genes

Lus10017764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.