Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26650 395 / 8e-131 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT2G25600 351 / 2e-113 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G32500 345 / 3e-111 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT5G37500 110 / 3e-26 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT4G22200 106 / 7e-25 AKT3, AKT2/3 potassium transport 2/3 (.1) AT3G02850 96 / 4e-21 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT2G03430 74 / 6e-15 Ankyrin repeat family protein (.1) AT3G09890 65 / 6e-12 Ankyrin repeat family protein (.1.2) AT5G40160 64 / 4e-11 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT3G04710 64 / 5e-11 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033052 [exp] 722 / 0 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10019442 [exp] 566 / 0 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10043298 [exp] 565 / 0 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10013115 [exp] 343 / 9e-111 AT2G25600 1036 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10002529 [exp] 337 / 5e-108 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10008082 [exp] 300 / 2e-94 AT2G25600 994 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10003644 [exp] 108 / 8e-26 AT4G22200 511 / 3e-174 potassium transport 2/3 (.1) Lus10019944 [exp] 108 / 2e-25 AT4G22200 1111 / 0.0 potassium transport 2/3 (.1) Lus10015474 [exp] 108 / 3e-25 AT4G22200 1093 / 0.0 potassium transport 2/3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G154600 [exp] 487 / 1e-169 AT2G26650 816 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.018G071400 [exp] 443 / 5e-149 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.006G249900 [exp] 395 / 3e-130 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.018G031600 [exp] 389 / 4e-128 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.012G043000 [exp] 110 / 3e-26 AT3G02850 1032 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.003G018800 [exp] 110 / 4e-26 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.004G083300 [exp] 103 / 7e-24 AT3G02850 1268 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.017G135400 [exp] 103 / 7e-24 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.004G132200 [exp] 93 / 2e-20 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.013G062000 [exp] 77 / 3e-15 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0465 [flax] [poplar] PF11834 [flax] [poplar] KHA KHA, dimerisation domain of potassium ion channel
Representative CDS sequence Show only first row Show all	>Lus10017765 pacid=23176341 polypeptide=Lus10017765 locus=Lus10017765.g ID=Lus10017765.BGIv1.0 annot-version=v1.0 ATGGAGGGAGTGTTACTGGAAACAGAGAACATGCTGGCTCATGGCAGAATGGACATTCCTCTCAGTCTATGCTTTGCTGCAATGAGAGGAGATGATCTCC TGATGCAGCAGCTACTGAAACGTGGTCTAGATCCAAATGAGTCTGACAACAATGGCAGAGCAGCTCTGCACATTGCAGCAGCTCAGGGAAGTGAGAACTG TGTTCTTCTTCTGTTGGCTCATGGGGCTGATCCTAACTTTAAGGACTCAGATGGCAATATTCCACTATGGGAGGCAATGAAGGGTGGTCATGCAGGAGTA GTGAAGTTGCTGGTAGAAAAAGGTGCTAAGTTACAATCAGGAGATATTGCTCACTTCGCTTGCATTGCTGCTGAGGAGAACAACCTCAACTTGCTAAAGG AAATCACACGCTATGGAGGAGACATCACGCTCCCCAAGAACAACGGGAGCACAGCACTCCACGTAGCAGTCTGCGAGGATAATGTTGAGATCGTCCGGTA CCTTCTGAATAAAGGAGCTGACATTGACAAACCCGATGCCAATGGTTGGACTCCCAGGGAGCTAGCTGATCAACAAGGACATGAAGAGATACAATTGATA TTCAAAGCCTGCAACAAGGTACCCAAAGTGCGACCAGTTGTTGTCACGATTTCAGAGAAGCAGCAGGAGAATGGGATTAGGTACCTAGGGAGGTTCACAA GTGAGCCAACAATCAATCCAGTTAGAGAAGATGGAGGAGCCTTCTCGTCCGTGGATGATGGCTCGTTGGGTCGGAGCAGCAGGCCTAGGCGCAAGACCAA CAACTTCCACAACTCACTGTTTGGAATGATGTCAGCTGCTCAAAATGGGGAGAGTAATAAACAAGTTCTGTTCCCAAAACTCAACAACAAGGCAGCTAGA GTGACGATAAGTTTCCCCGAAAAGGGAGATGATACCAAGAAGCTTGTTCTGCTCCCTAAGAGCTTCCAAGAGTTACTTGACTTGGGGGCAAAGAAATATG GAATCCAGGTTGCTAAAGTGCTAACAAAGGATGGGATTGAAGTTGATGAGATTGAGGTGATTAGAGATGGAGATGATCTAATACTTGTTAGTGACGGGAC AACATCCGAGAGCACTGCCACCGCCATCAATGCTGATAGCTAA
AA sequence Show only first row Show all	>Lus10017765 pacid=23176341 polypeptide=Lus10017765 locus=Lus10017765.g ID=Lus10017765.BGIv1.0 annot-version=v1.0 MEGVLLETENMLAHGRMDIPLSLCFAAMRGDDLLMQQLLKRGLDPNESDNNGRAALHIAAAQGSENCVLLLLAHGADPNFKDSDGNIPLWEAMKGGHAGV VKLLVEKGAKLQSGDIAHFACIAAEENNLNLLKEITRYGGDITLPKNNGSTALHVAVCEDNVEIVRYLLNKGADIDKPDANGWTPRELADQQGHEEIQLI FKACNKVPKVRPVVVTISEKQQENGIRYLGRFTSEPTINPVREDGGAFSSVDDGSLGRSSRPRRKTNNFHNSLFGMMSAAQNGESNKQVLFPKLNNKAAR VTISFPEKGDDTKKLVLLPKSFQELLDLGAKKYGIQVAKVLTKDGIEVDEIEVIRDGDDLILVSDGTTSESTATAINADS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10017765 [exp]	0	1
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10033052 [exp]	1.0	0.9518
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10017766 [exp]	2.2	0.9029
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032074 [exp]	4.0	0.9254
AT4G23900			Nucleoside diphosphate kinase ...		Lus10023076 [exp]	4.9	0.8218
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10030975 [exp]	5.7	0.9042
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014606 [exp]	6.0	0.9181
AT1G13680			PLC-like phosphodiesterases su...		Lus10031973 [exp]	6.5	0.8992
AT4G32790			Exostosin family protein (.1)		Lus10014425 [exp]	6.6	0.8620
AT3G62930			Thioredoxin superfamily protei...		Lus10005940 [exp]	7.5	0.8579
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10021165 [exp]	7.9	0.8974

Compare expression of checked genes

Lus10017765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.