Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26650 688 / 0 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT2G25600 580 / 0 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G32500 572 / 0 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT5G46240 513 / 6e-178 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT4G18290 486 / 5e-167 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT4G22200 416 / 2e-138 AKT3, AKT2/3 potassium transport 2/3 (.1) AT4G32650 395 / 1e-132 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT3G02850 240 / 3e-71 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G37500 239 / 6e-71 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT5G15410 64 / 8e-11 ATCNGC2, DND1 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033052 [exp] 832 / 0 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10043298 [exp] 792 / 0 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10019442 [exp] 790 / 0 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10002529 [exp] 548 / 0 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10008082 [exp] 524 / 5e-180 AT2G25600 994 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10013115 [exp] 524 / 1e-179 AT2G25600 1036 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10042831 [exp] 511 / 9e-176 AT5G46240 825 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10028128 [exp] 509 / 4e-175 AT5G46240 827 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10007670 [exp] 439 / 7e-150 AT4G32650 724 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G071400 [exp] 731 / 0 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.018G031600 [exp] 619 / 0 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.006G249900 [exp] 610 / 0 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.004G132200 [exp] 518 / 1e-178 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.006G245000 [exp] 433 / 3e-147 AT4G32650 752 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.018G035500 [exp] 431 / 2e-146 AT4G32650 777 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.012G124944 [exp] 415 / 2e-140 AT4G32650 734 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.003G018800 [exp] 422 / 5e-140 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.006G154600 [exp] 320 / 3e-103 AT2G26650 816 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.017G135400 [exp] 232 / 5e-68 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein
Representative CDS sequence Show only first row Show all	>Lus10017766 pacid=23176323 polypeptide=Lus10017766 locus=Lus10017766.g ID=Lus10017766.BGIv1.0 annot-version=v1.0 ATGGACAGTTTGATAGGGAAGAGGACGTTCAACGTCTCTGTCTGTGGGCAAGAGGAGCTGGAACACATATCAAGGGATGGAAGCCATTACAGTCTCTCAA CTGGGATATTGCCGTCACTTGGTGCAAGGAGTAATCGGAGAGCCAAACTCAGGAACTTCATGATCTCGCCTTATGATCGTCGATACAGGATATGGGATAC ATTCCTCATTGTGCTGGTGATTTACACATCATGGGCTTCACCTTTCGAGTTTGGTTTCTTAAGGAAACCAGAGAGACCACTCTCAGTTATCGACAACATT GTGAATGGATTCTTTGCTGTGGATATCATTCTCACTTTTTTTGTTGCTTACCTGGACAAATCAACCTACCTTCTTGTGGACAACCGAAGACAGATTGCTT GGAAGTACACAAGGACATGGCTGGCCTTCGATGCCATTTCCGTCATCCCATCAGAGCTCGCTTGGAGAATTTCCCCAAAGCCATTCAGATCATATGGCAT GCTCAACATGCTTCGTCTATGGCGTCTCAGAAGAGTTAGTGCTCTCTTTTCTCGGTTGGAGAAAGACAGGAACTACAACTACTTCTGGGTTCGATGTGCC AAACTCATTTGTGTCACCGTTTTTGCTGTCCATTGTGCTGGATGTTTCTATTATCTTATCGCTGCTCGCTACCACAACCCAGAAAGAACATGGATTGGGT CATCTCTTGGAGATGACTTTCTGCAAAGAAGCTTATGGATTCGATATGTGACATCAATGTACTGGTCTATTACTACTCTGACAACTGTTGGCTATGGTGA TCTCCATCCTGTGAACACAAGAGAGATGGTTTTTGACATCTTCTACATGCTCTTCAACCTTGGACTCACAGCATACTTGATTGGTAACATGACCAACTTG GTGGTCCATGGTACTAGTCGAACGAGAAAATTTAGAGATACCATACAAGCTGCATCAAGCTTTGCTCACAGGAATCAGCTACCTGTAAGGCTACAAGATC AAATGCTGGCACATTTGTGTTTGAAATTCAGGACCGATTCGGAGGGACTGCAGCAGCAGGAGACACTTGATTCCCTTCCAAAAGCCATTCGGTCGGGCAT TTCACATTTCCTCTTCTACTCTCTTGTGGACAACGTCTACTTGTTTCGCGGGGTCTCCAATGACTTGCTTTTCCAGCTGGTCTCAGAGATGAAAGCTGAG TACTTCCCTCCAAAAGAAGATGTGATTTTGCAGAATGAAGCACCAACAGACTTCTATATACTCGTCACTGGAGCAGTGGATCTAGTGGTTCTCAAAAACG GAGTAGAACAGGCAAGTTCATGCACCTCGAAATGCTCAACTCACTATTAG
AA sequence Show only first row Show all	>Lus10017766 pacid=23176323 polypeptide=Lus10017766 locus=Lus10017766.g ID=Lus10017766.BGIv1.0 annot-version=v1.0 MDSLIGKRTFNVSVCGQEELEHISRDGSHYSLSTGILPSLGARSNRRAKLRNFMISPYDRRYRIWDTFLIVLVIYTSWASPFEFGFLRKPERPLSVIDNI VNGFFAVDIILTFFVAYLDKSTYLLVDNRRQIAWKYTRTWLAFDAISVIPSELAWRISPKPFRSYGMLNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCA KLICVTVFAVHCAGCFYYLIAARYHNPERTWIGSSLGDDFLQRSLWIRYVTSMYWSITTLTTVGYGDLHPVNTREMVFDIFYMLFNLGLTAYLIGNMTNL VVHGTSRTRKFRDTIQAASSFAHRNQLPVRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSGISHFLFYSLVDNVYLFRGVSNDLLFQLVSEMKAE YFPPKEDVILQNEAPTDFYILVTGAVDLVVLKNGVEQASSCTSKCSTHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10017766 [exp]	0	1
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10017765 [exp]	2.2	0.9029
					Lus10017767 [exp]	2.8	0.8494
AT1G13680			PLC-like phosphodiesterases su...		Lus10031973 [exp]	4.2	0.8843
AT2G37330		ALS3	aluminum sensitive 3 (.1)		Lus10025278 [exp]	6.9	0.7490
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10030975 [exp]	7.7	0.8740
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10018230 [exp]	9.2	0.8415
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10006065 [exp]	9.2	0.8419
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032074 [exp]	15.0	0.8348
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10033052 [exp]	16.7	0.8350
					Lus10003629 [exp]	16.7	0.7986

Compare expression of checked genes

Lus10017766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.