Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26710 679 / 0 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14620 362 / 3e-120 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT3G14660 340 / 1e-111 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14690 335 / 1e-109 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14680 335 / 2e-109 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14610 334 / 3e-109 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT2G46950 330 / 5e-107 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT3G14630 327 / 1e-106 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT1G75130 327 / 1e-106 CYP721A1 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) AT3G14650 326 / 5e-106 CYP72A11 "cytochrome P450, family 72, subfamily A, polypeptide 11", cytochrome P450, family 72, subfamily A, polypeptide 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033044 [exp] 923 / 0 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10016310 [exp] 363 / 2e-120 AT1G75130 596 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10042487 [exp] 348 / 3e-114 AT3G14690 604 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10042486 [exp] 337 / 3e-110 AT3G14690 580 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10025756 [exp] 334 / 5e-109 AT2G46950 578 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Lus10010821 [exp] 332 / 2e-108 AT1G75130 522 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10026178 [exp] 331 / 1e-107 AT3G14690 607 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10036822 [exp] 331 / 7e-107 AT2G26710 410 / 4e-137 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036820 [exp] 328 / 8e-107 AT2G26710 397 / 2e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G154500 [exp] 706 / 0 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.018G070900 [exp] 705 / 0 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.002G134500 [exp] 372 / 2e-123 AT1G75130 540 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.011G098800 [exp] 359 / 6e-119 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.002G263800 [exp] 358 / 1e-118 AT1G75130 493 / 2e-171 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.011G101500 [exp] 358 / 2e-118 AT3G14690 609 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.005G035200 [exp] 355 / 2e-117 AT1G75130 547 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.011G099400 [exp] 355 / 3e-117 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101401 [exp] 353 / 1e-116 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099800 [exp] 353 / 2e-116 AT3G14690 612 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10017771 pacid=23176336 polypeptide=Lus10017771 locus=Lus10017771.g ID=Lus10017771.BGIv1.0 annot-version=v1.0 ATGCTGGAAAGGGAAGGGTTGCCCTTGTTGTTGTGGGTGGTGCTCAAGTTCATAACAATCAGCTTCCTTGCTCTGCTTTTTGTGCTCAAGATAGTGGTGC TGCTATGGTGGAAGCCTAGGAGAATTGAGGAGCATTTCTCAAGGCAAGGAATCAGAGGTCCTCCTTATAGATTCTTCATTGGGAATGTCAAGGAGCTTGT GGAGATGATGCTCAAGGCTTCCTCTCAACCCATGCCTACTTTCTCCCACAACATTCTTCCTCGAGTCCTCTCTTTCTACCACCATTGGAAGAAGCTCTAT GGCGACGGCCTCCTCAGCCTTAAGGGCGAGAAATGGGTTCATCACCGCAAAATCATTACTCCTACTTTCCACATGGAAAACCTCAAGTTACTGATGCCGG TTGTGGCGGAGAGCGTGACCGGAATGTTGGACAAGTGGGACCACACATTGTCGGAATCCGGCGAAGTCGAGATGGAAGTCTCCGAATGGTACCAAACTCT GACCGAGGACGTCATTACTCGAACCTTTTTTGGAATCAGTTACGAAGACGGAAAAGCCATCTTCAAGCTACAGAGTAGCCAAATTCTCCTGGCCGCCGAA TCCTTCCAGAAAGTCTTCATCCCTGGTTACCGCTTCTTCCCGACGAAGAAGAATATGAATTCGTGGAAATTCGACAAGGAAGTGAGGCACTTACTGACGA AATTGATCGAGCAACGGAAGCAGAGCAGCTCAGGCGACGGAAAAGCAAAGGTGGATGGAGGAGGTAGTAGTACGGCGGCGGCGCCAAAGGATTTGCTCGG GGTAATGATTGAGGCGTCCAAGTTGTCTCCGAATAACGTGACCCCAAACGACATCGTAGAGGAGTGCAAAAGTTTCTTCTTTGCGGGGAAACATACCACA TCCAATCTGCTGACGTGGACAACTGTCTTGCTCGCTATGCACCCACAGTGGCAGGTTCAGGCACGTGACGAGCTCCTCAGGGTCTGTGGATCACGTGACA TCCCCTCCAAAGATGATATCGTCAAACTCAAAACGCTGACGATGATAGTGAATGAGTCTTTACGATTGTACCCGCCGACAATTGCCACCATCCGTAGGAC GAAGACGGACGTGGATCTAGGAGGGTATAAGGTGCCCTCCGGCACGGAGCTGCTCATCCCGATTTTAGCACTTCATCATGATCAGAAAATATGGGGGAAT GATGTAAATGAGTTCAATCCTGCTCGATTTTCGGAAGGCGTAGTTCATGCCGCAAAACATCCAGCAGCTTTCATACCGTTCGGACTCGGGGTTCGCAGTT GTATTGGGCAGAACCTAGCTCTATTGCAAACCAAGCTCACGCTCGCAATCATAATCCGACGATTCAGTTTCAAGCTATCCCCAACTTATAAACATGCGCC AACCGTCCTGTTGATGCTTTATCCTCAATATGGTGCGCCCGTAATCTTTGAGAAACTTACAACCTCACAATTATCGTCGTCGGAATTATTATCTAACAGT CATCATCAATGA
AA sequence Show only first row Show all	>Lus10017771 pacid=23176336 polypeptide=Lus10017771 locus=Lus10017771.g ID=Lus10017771.BGIv1.0 annot-version=v1.0 MLEREGLPLLLWVVLKFITISFLALLFVLKIVVLLWWKPRRIEEHFSRQGIRGPPYRFFIGNVKELVEMMLKASSQPMPTFSHNILPRVLSFYHHWKKLY GDGLLSLKGEKWVHHRKIITPTFHMENLKLLMPVVAESVTGMLDKWDHTLSESGEVEMEVSEWYQTLTEDVITRTFFGISYEDGKAIFKLQSSQILLAAE SFQKVFIPGYRFFPTKKNMNSWKFDKEVRHLLTKLIEQRKQSSSGDGKAKVDGGGSSTAAAPKDLLGVMIEASKLSPNNVTPNDIVEECKSFFFAGKHTT SNLLTWTTVLLAMHPQWQVQARDELLRVCGSRDIPSKDDIVKLKTLTMIVNESLRLYPPTIATIRRTKTDVDLGGYKVPSGTELLIPILALHHDQKIWGN DVNEFNPARFSEGVVHAAKHPAAFIPFGLGVRSCIGQNLALLQTKLTLAIIIRRFSFKLSPTYKHAPTVLLMLYPQYGAPVIFEKLTTSQLSSSELLSNS HHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10017771 [exp]	0	1
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10033044 [exp]	1.0	0.8896
AT2G43900			Endonuclease/exonuclease/phosp...		Lus10027073 [exp]	3.7	0.8140
AT1G09080		BIP3	binding protein 3, Heat shock ...		Lus10026480 [exp]	5.0	0.7193
					Lus10034887 [exp]	5.7	0.7678
AT5G43460			HR-like lesion-inducing protei...		Lus10041152 [exp]	6.5	0.8040
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10042056 [exp]	10.4	0.7363
AT5G66240			Transducin/WD40 repeat-like su...		Lus10017157 [exp]	11.1	0.7875
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028686 [exp]	12.5	0.7520
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10041541 [exp]	13.6	0.7759
AT1G65700			Small nuclear ribonucleoprotei...		Lus10028183 [exp]	15.2	0.7701

Compare expression of checked genes

Lus10017771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.