Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01650 280 / 4e-91 RGLG1 RING domain ligase1 (.1) AT5G14420 276 / 7e-90 RGLG2 RING domain ligase2 (.1.2.3.4) AT1G67800 255 / 6e-82 Copine (Calcium-dependent phospholipid-binding protein) family AT5G63970 223 / 2e-70 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) AT1G79380 212 / 1e-65 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) AT5G07300 64 / 3e-11 BON2 BONZAI 2, Calcium-dependent phospholipid-binding Copine family protein (.1) AT5G61900 64 / 6e-11 CPN1, BON1 COPINE 1, BONZAI 1, Calcium-dependent phospholipid-binding Copine family protein (.1.3) AT5G61910 64 / 7e-11 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) AT1G08860 62 / 2e-10 BON3 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033043 [exp] 338 / 3e-114 AT3G01650 492 / 4e-172 RING domain ligase1 (.1) Lus10006231 [exp] 276 / 1e-90 AT3G01650 514 / 0.0 RING domain ligase1 (.1) Lus10036879 [exp] 278 / 3e-90 AT3G01650 555 / 0.0 RING domain ligase1 (.1) Lus10032097 [exp] 275 / 2e-89 AT3G01650 514 / 0.0 RING domain ligase1 (.1) Lus10014587 [exp] 271 / 9e-89 AT3G01650 517 / 0.0 RING domain ligase1 (.1) Lus10022294 [exp] 272 / 2e-88 AT3G01650 608 / 0.0 RING domain ligase1 (.1) Lus10011405 [exp] 271 / 5e-88 AT5G14420 566 / 0.0 RING domain ligase2 (.1.2.3.4) Lus10006463 [exp] 248 / 2e-79 AT3G01650 547 / 0.0 RING domain ligase1 (.1) Lus10003654 [exp] 246 / 4e-79 AT3G01650 376 / 2e-127 RING domain ligase1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G090100 [exp] 298 / 5e-99 AT5G14420 575 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.001G342200 [exp] 290 / 2e-95 AT5G14420 572 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.010G049600 [exp] 285 / 2e-93 AT5G14420 580 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.008G183600 [exp] 281 / 7e-92 AT5G14420 571 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.006G002600 [exp] 264 / 6e-86 AT5G14420 521 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.005G065700 [exp] 241 / 8e-77 AT5G63970 551 / 0.0 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) Potri.016G003000 [exp] 239 / 2e-76 AT5G14420 500 / 2e-176 RING domain ligase2 (.1.2.3.4) Potri.010G174800 [exp] 239 / 1e-75 AT1G79380 535 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) Potri.008G081300 [exp] 232 / 9e-74 AT1G79380 518 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) Potri.007G103700 [exp] 215 / 2e-67 AT5G63970 524 / 0.0 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [flax] [poplar] vWA-like PF07002 [flax] [poplar] Copine Copine
Representative CDS sequence Show only first row Show all	>Lus10017774 pacid=23176322 polypeptide=Lus10017774 locus=Lus10017774.g ID=Lus10017774.BGIv1.0 annot-version=v1.0 ATGCCGACGATTCAACAATCTGCACCCAAGCGAAATTGTTCCCAACCAACCCGTGACTCCGCTAGCAATAATGCAAATGTGGGTGGAAGTGTGAGAAGAA AAGACGCCATCCCAAAAAATGGTGAACTCCATTTTGCAGAGGGAAGCTTCTTGGAACCACTCTCTCCTTCCTATCACTCACTGATTACTAACATCCATTT TCCTTGTGCTTTGTTAGCTCTACTCTCTCTGGATTCTCTTTCATTCCCTCTCTCTGTCTCTTCTTCTCAATTCTGCCACTCTCTCCTCCTTCAAGCTGCT TTGAGTTCTGCCCCATACCAGCCATATCCACCATCTCTGCCTCAAAGCTATGACAATCAAGTTCAGAATAACAGGAGTGTGGACAGGAAGTATTCCAAGA TAGATGATAACTATAAAAGTCTGGAGCAGGTTACGGATGCTCTTGCACGTGCTGGCCTGGAATCTTCAAATCTCATTGTGGGAATTGATTTTACAAAGAG CAATGAGTGGACAGGTTTGGCCTCATTTGGTTGTGAATTTTCTAGTGGTGCTGTTATCTTTTTGTCTCATATCAACAACTCAACATTAGGTGCCAGATCA TTCAGCAGGAAAAGTCTACATCATATTGGAGATGATGCTCAAAATCCATATGAACAAGCAATCTCAATCATTGGCAAGACGCTATCATCTTTTGATGAAG ACAACCTCATCCCATGTTTTGGCTTTGGCGATGCATCAACTCATGATCAAGAAGTTTTCAGCTTTTACCCTGATGAAAGGTTCTGCAATGGTTTCGAGGA AGTTTTGACACGATATAGAGAAATCGTCCCTGAATTAAAGCTTGCAGGACCTACGTCGTTTGCTCCTGTAATTGAGATGGCCATTACTATAGTTGAGCAA AGTCATGGCCAGTACCATGTTCTAGTAATCATAGCTGATGGACAGGTATATTCTCTAGCGTGTGATGGTTTTGACTAA
AA sequence Show only first row Show all	>Lus10017774 pacid=23176322 polypeptide=Lus10017774 locus=Lus10017774.g ID=Lus10017774.BGIv1.0 annot-version=v1.0 MPTIQQSAPKRNCSQPTRDSASNNANVGGSVRRKDAIPKNGELHFAEGSFLEPLSPSYHSLITNIHFPCALLALLSLDSLSFPLSVSSSQFCHSLLLQAA LSSAPYQPYPPSLPQSYDNQVQNNRSVDRKYSKIDDNYKSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGLASFGCEFSSGAVIFLSHINNSTLGARS FSRKSLHHIGDDAQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDERFCNGFEEVLTRYREIVPELKLAGPTSFAPVIEMAITIVEQ SHGQYHVLVIIADGQVYSLACDGFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10017774 [exp]	0	1
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10009964 [exp]	4.4	0.8941
					Lus10020840 [exp]	4.7	0.8557
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10019482 [exp]	14.9	0.8876
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10043332 [exp]	19.7	0.8845
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10030088 [exp]	19.9	0.8866
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10038148 [exp]	20.4	0.8530
AT3G30300			O-fucosyltransferase family pr...		Lus10034356 [exp]	22.1	0.8487
AT5G63960		EMB2780	DNA binding;nucleotide binding...		Lus10020862 [exp]	27.1	0.8824
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Lus10039130 [exp]	27.7	0.8738
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043477 [exp]	30.3	0.8779

Compare expression of checked genes

Lus10017774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.