Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26710 357 / 2e-116 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14630 356 / 2e-116 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT3G14610 352 / 1e-114 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14680 352 / 1e-114 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14690 344 / 1e-111 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT2G46960 344 / 1e-111 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT3G14660 343 / 3e-111 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT2G46950 345 / 4e-111 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT3G14640 342 / 6e-111 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT4G27710 341 / 2e-110 CYP709B3 "cytochrome P450, family 709, subfamily B, polypeptide 3", cytochrome P450, family 709, subfamily B, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026085 [exp] 856 / 0 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10026084 [exp] 855 / 0 AT2G26710 375 / 6e-125 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10028119 [exp] 726 / 0 AT1G30130 368 / 2e-121 unknown protein Lus10002311 [exp] 705 / 0 AT3G14630 317 / 8e-104 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) Lus10019184 [exp] 603 / 0 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) Lus10002108 [exp] 519 / 6e-180 AT2G26710 353 / 1e-116 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10019177 [exp] 511 / 1e-176 AT2G26710 373 / 4e-124 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036818 [exp] 509 / 5e-176 AT2G26710 369 / 2e-122 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10036816 [exp] 509 / 1e-175 AT3G14620 339 / 8e-111 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G139600 [exp] 581 / 0 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139400 [exp] 565 / 0 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139200 [exp] 553 / 0 AT2G26710 369 / 6e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G071200 [exp] 536 / 0 AT2G26710 346 / 9e-114 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G014407 [exp] 526 / 0 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139300 [exp] 522 / 0 AT2G26710 372 / 1e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.011G098800 [exp] 380 / 2e-125 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.010G139500 [exp] 376 / 7e-125 AT3G14620 283 / 4e-90 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.018G070900 [exp] 377 / 2e-124 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.011G099400 [exp] 373 / 1e-122 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10017775 pacid=23176317 polypeptide=Lus10017775 locus=Lus10017775.g ID=Lus10017775.BGIv1.0 annot-version=v1.0 ATGTCGAAGAATATGGACCGCTCCAGAAAAGAAACTGCATTTGCCCTTCTAGCTCTGATGGAAATACCTTCTCAGTATAAAGCAACACTTGAGCTTAATA TATTAGGTGCCTCCAGAGGGAAGGGCATCGATAGAATTCCTTTGCCTCCTCCCCAGTATGGTGCCTCATTTAGCAGTCCGAAACTTTCACGATCAAGCAG TTTTCTACCAAGTGCACCATCTTCTGGTAGAGAGACCGACTATGACATCCAACCCCCGTCTAGTTCTTCGGATAACCATTTGTGTCCCATATGCCTCACA GACCCAAAGAACATGGCTTTTGGCTGCGGACATCAGCTGGCTCTGGCCCTCTGCATCGCCTTGCCTCTGGCTTTGATTTCAATATTGCTTTACAGTCTGA TAGTAAAGCCAATCCTGCTGCAGCGTCGTCTGAATTCCCTTGGAATCAGAGGCCCATCCTACAGATTCTTGTATGGAAATACCCTGGAAATTCAGAAGCT GAGAAAAGATGCCATGGCCAAACCCATGGCAGGTCTTTCTCATGATATTTATTCCAGGTTGCAGCCTCACTTATCCCTCTGGTCTAAGACATATGGCCCG AACTTCATGTTCTGGTTGGGTCGTCGCCCTTTCTTGGTTTTGTCGGACCTGGAGATGGTGAAGGAGGTGGCGAATGATAGGGAGAAAGCTTACAGGAAAG TACCACCGAGAGGTGCAATGAAGCAGATATTGGGGGATGGTCTGGTCACATCTGACGGTGAAAAGTGGGCCAAGATGAGGAAGCTTGCTAATATTGCTTT CTTTGGTGAGAGCTTAAAGAATATGATTCCGGCAATGATTGCTAGTACAGACATGATGATGGAGAGGTGGAAGAGTCATGTAGGGAAAGAGATTGAGGTG TTTGAAGAATTCAGGTTCTTAACGTCTGAAATCATTTCCAGGACTGCGTTTGGTAGTAGCTACCTTGAAGGGAAAGAGCTACTTTACAAGTTAAGTAAGC TAAATGAGCTTGCTGCTGCCGCTGCCTTCAAAATTAGGACTCCTGGAATCAGCAAGATTTACAAAAGCAGAGCTGATATTGAAGCAAATGAGCTTGAGCA AGGAATAAAAGCGTCTATATTGGGAATGCTTCGAAAAAGAGAAGAGATGGTCGCTACTGGGCAGGCGGACAGCTTTGGGAATGATTTCCTTGGACTACTT TTGAGAGCTAATCATGAAAGTGACAAATCGAAGCGCATTACGGTGGATGATGTTGTGGATGAGTGCAAGACCTTCTATCTTGCTGGACAAGAAACAACCA ACACTCTGTTGGCATGGGTTATCTTACTTCTATCTATCCATACAGATTGGCAGGATAAAGCAAGAGCAGAAGTTCTGAGCCAATTCGGGAGCACAACTCC TGATGCAGATGGGATTGCAAGACTCAAGACTTTGAACATGATTATCAATGAGACTCTGCGATTATATCCTCCTGCGATTGGGATTGCTCGAGAAGTTGTG AAGGAAGTTCAAGTTGGGAAGCTGACTCTCCTCAAAGATATAAACATCACGGTCGATACTATATCGCTTCATCAGGACCCTGAAATATGGGGAGAAGATG CACATCATTTCAATCCAGAAAGGTTTTCGGAAGGAGTTGCGAAAGCCACCAAAAATAATCCAATTGCATTTCAACCGTTTGGGATAGGGGTGAGAGTTTG CGTGGGATCAAGCTTTTCAGCAAATGAAGCAAAGATTGCACTTTCAATGATCCTTCAGCGTTATACATTTACCCTTTCTCCAACATACATCCACTCTCCC ACTCAACTTGTCACAACCCGTCCCCAACATGGAGTTCAGATCATCCTCCATGCTTTACAGTAA
AA sequence Show only first row Show all	>Lus10017775 pacid=23176317 polypeptide=Lus10017775 locus=Lus10017775.g ID=Lus10017775.BGIv1.0 annot-version=v1.0 MSKNMDRSRKETAFALLALMEIPSQYKATLELNILGASRGKGIDRIPLPPPQYGASFSSPKLSRSSSFLPSAPSSGRETDYDIQPPSSSSDNHLCPICLT DPKNMAFGCGHQLALALCIALPLALISILLYSLIVKPILLQRRLNSLGIRGPSYRFLYGNTLEIQKLRKDAMAKPMAGLSHDIYSRLQPHLSLWSKTYGP NFMFWLGRRPFLVLSDLEMVKEVANDREKAYRKVPPRGAMKQILGDGLVTSDGEKWAKMRKLANIAFFGESLKNMIPAMIASTDMMMERWKSHVGKEIEV FEEFRFLTSEIISRTAFGSSYLEGKELLYKLSKLNELAAAAAFKIRTPGISKIYKSRADIEANELEQGIKASILGMLRKREEMVATGQADSFGNDFLGLL LRANHESDKSKRITVDDVVDECKTFYLAGQETTNTLLAWVILLLSIHTDWQDKARAEVLSQFGSTTPDADGIARLKTLNMIINETLRLYPPAIGIAREVV KEVQVGKLTLLKDINITVDTISLHQDPEIWGEDAHHFNPERFSEGVAKATKNNPIAFQPFGIGVRVCVGSSFSANEAKIALSMILQRYTFTLSPTYIHSP TQLVTTRPQHGVQIILHALQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10017775 [exp]	0	1
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10033308 [exp]	1.0	0.9812
AT2G18670			RING/U-box superfamily protein...		Lus10015506 [exp]	2.0	0.9811
AT1G71696		SOL1.4, SOL1.3,...	SUPPRESSOR OF LLP1 1, carboxyp...		Lus10028694 [exp]	2.0	0.9744
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10033889 [exp]	3.9	0.9793
AT5G53850			haloacid dehalogenase-like hyd...		Lus10009198 [exp]	12.6	0.9547
AT1G15170			MATE efflux family protein (.1...		Lus10028540 [exp]	13.0	0.9681
AT4G08320		TPR8	tetratricopeptide repeat 8, Te...		Lus10025656 [exp]	13.0	0.9578
AT3G50845			Protein of unknown function (D...		Lus10026019 [exp]	14.1	0.9591
AT1G11320			unknown protein		Lus10017280 [exp]	15.4	0.9536
AT1G06000			UDP-Glycosyltransferase superf...		Lus10007971 [exp]	16.1	0.9711

Compare expression of checked genes

Lus10017775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.