Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50240 371 / 1e-129 PIMT2, AtPIMT2 Arabidopsis thaliana protein-l-isoaspartate methyltransferase 2, protein-l-isoaspartate methyltransferase 2 (.1.2.3) AT3G48330 363 / 8e-128 ATPIMT1, PIMT1 Arabidopsis thaliana protein-l-isoaspartate methyltransferase 1, protein-l-isoaspartate methyltransferase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033049 [exp] 454 / 2e-163 AT5G50240 365 / 1e-128 Arabidopsis thaliana protein-l-isoaspartate methyltransferase 2, protein-l-isoaspartate methyltransferase 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G090300 [exp] 414 / 2e-146 AT3G48330 380 / 5e-134 Arabidopsis thaliana protein-l-isoaspartate methyltransferase 1, protein-l-isoaspartate methyltransferase 1 (.1.2) Potri.015G086600 [exp] 393 / 2e-137 AT3G48330 374 / 8e-131 Arabidopsis thaliana protein-l-isoaspartate methyltransferase 1, protein-l-isoaspartate methyltransferase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01135 [flax] [poplar] PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Representative CDS sequence Show only first row Show all	>Lus10017776 pacid=23176313 polypeptide=Lus10017776 locus=Lus10017776.g ID=Lus10017776.BGIv1.0 annot-version=v1.0 ATGGCACAACTAATTAGTGTGTCAGGATCGGGAGTTATTGCGTATAGCATCCGCAGTTGTTGCATTAGTGCCTCTCTTTCTTCTCCTCTGAACCGCTTCT TCTCAACCTCCTTCCATCCCCATCTCCGCACTTCCACCGCTTCCGCTACGTCGTCTTTCCCTTCTCGTTTCCTCACTCTCCGTTCCTTCCTCACGGGAAA TTCTTTCTTCTCCACGATGGAGAGATACTGGTCTGGTAATAGCATTGATAAGAACAAGGGTATGGTGGAAAATTTGAAGCGTTACGGAGTCTTCAATTCA GATAAAGTGGCTCAAGTAATGGATTCTATCGACAGGGCTTTGTTTGTACCGGATGGAACTGCTGCTTATGTTGACAGCCCCATGGCAATTGGGTTCAATG CCACTATATCTGCACCTCATATGCACGCAACTTGCCTTCAGTTGTTGGAGGATAATCTGAAGCCCGGCATGCGTGCTCTGGATGTTGGTTCAGGGACTGG ATATTTGACAGCATGCTTTGCAATGATGGTCGGCCCAGAAGGCCGAGCTATTGGTGTGGATCATATTCCTGAGCTTGTAGCTACATCAATCAAGAATGTG GAGAAAAGTGGTGCAGCTTCTTTGTTGAAAGACGGTTCTCTTCAACTGCATGCTGGAGATGGAAGACAAGGTTGGTCGGAGTTTGCACCTTACAACGCCA TCCACGTTGGGGCTGCAGCATCAGAAATCCCACAACCACTGATTGACCAGTTGAAGCCCGGTGGGCGAATGGTGATTCCAGTTGGGAAAAATTTTCAGGA GTTGAAGGTAGTTGACAAGAACCAGGATGGGTCCATTAGCGTACGAAGTGAAACGTCTGTGCGATACATCCCGCTGACAGACAAAGATGCTCAATTGAGA GGCAACTGA
AA sequence Show only first row Show all	>Lus10017776 pacid=23176313 polypeptide=Lus10017776 locus=Lus10017776.g ID=Lus10017776.BGIv1.0 annot-version=v1.0 MAQLISVSGSGVIAYSIRSCCISASLSSPLNRFFSTSFHPHLRTSTASATSSFPSRFLTLRSFLTGNSFFSTMERYWSGNSIDKNKGMVENLKRYGVFNS DKVAQVMDSIDRALFVPDGTAAYVDSPMAIGFNATISAPHMHATCLQLLEDNLKPGMRALDVGSGTGYLTACFAMMVGPEGRAIGVDHIPELVATSIKNV EKSGAASLLKDGSLQLHAGDGRQGWSEFAPYNAIHVGAAASEIPQPLIDQLKPGGRMVIPVGKNFQELKVVDKNQDGSISVRSETSVRYIPLTDKDAQLR GN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50240		PIMT2, AtPIMT2	Arabidopsis thaliana protein-l...		Lus10017776 [exp]	0	1
AT1G18010			Major facilitator superfamily ...		Lus10043371 [exp]	2.8	0.8616
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10026637 [exp]	3.5	0.8604
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10007930 [exp]	3.9	0.8638
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10016519 [exp]	4.5	0.8591
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10007357 [exp]	4.5	0.8430
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10013483 [exp]	9.2	0.8410
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Lus10000963 [exp]	9.5	0.8366
AT3G58840		PMD1	peroxisomal and mitochondrial ...		Lus10010937 [exp]	9.8	0.8394
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10004724 [exp]	10.1	0.8422
AT3G26000			Ribonuclease inhibitor (.1)		Lus10006438 [exp]	11.2	0.8267

Compare expression of checked genes

Lus10017776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.