Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01680 479 / 5e-160 SEOR1, SEOb Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein AT3G01670 406 / 6e-131 SEOa sieve element occlusion a, unknown protein AT1G67790 154 / 2e-39 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034567 [exp] 788 / 0 AT3G01680 590 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10021828 [exp] 779 / 0 AT3G01680 592 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022304 [exp] 686 / 0 AT3G01680 590 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10000551 [exp] 635 / 0 AT3G01680 539 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10032103 [exp] 629 / 0 AT3G01680 757 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10014580 [exp] 627 / 0 AT3G01680 758 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022305 [exp] 619 / 0 AT3G01680 744 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10022306 [exp] 610 / 0 AT3G01680 735 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10000548 [exp] 580 / 0 AT3G01680 677 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G050300 [exp] 782 / 0 AT3G01680 577 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.010G050501 [exp] 781 / 0 AT3G01680 575 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.008G183200 [exp] 752 / 0 AT3G01680 576 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.010G050701 [exp] 704 / 0 AT3G01680 534 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340500 [exp] 638 / 0 AT3G01680 730 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340600 [exp] 637 / 0 AT3G01680 746 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.017G071000 [exp] 625 / 0 AT3G01680 693 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340400 [exp] 625 / 0 AT3G01680 724 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340200 [exp] 614 / 0 AT3G01680 724 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Potri.001G340300 [exp] 612 / 0 AT3G01680 718 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11594 [flax] [poplar] Med28 Mediator complex subunit 28
Representative CDS sequence Show only first row Show all	>Lus10017777 pacid=23176349 polypeptide=Lus10017777 locus=Lus10017777.g ID=Lus10017777.BGIv1.0 annot-version=v1.0 ATGGAAGGAGCACAAAACCAAAGAGAGAAGCTGATGATCAAGGACATGAGAATGTCCAGAGGCTCTGATGACAGGGACATGATGAAGCAGATTCTAGCAA GCCACTCTCCTGACGGCCGCCACTTCAATGTGAAACCCATCATCCATGTTGTCGAGGCCATCTTACGCCGTGCCAATTCCAGCATTTACCATGTTCTAAA TGGAACTCAAAGTGAAGCTGTTGAGAATCTGGAGGACACGTCCAGTCCAGCCGGTCCAGACGACAATATCGAATACCTGGCTTACAGCATACACACAGTT GCTTGCGAGATGTCATGCAAATGCTCTGGAGGAGGAGATGCACACTCTACCACACTGGCAGTACTAGAATCTCTCAAAAGCTATGCATGGGATGCCAAAG TTGTGATTTCGCTGGCCGCCTTTTCTGTCAACTATGGGGAATTCCACCTTGTCATCCAGCTGCTTTCTGTGAACCCATTAGCCAAGTCAGTAGCTATACT CAAGCAGCTCCCAGATATCATAGAACAAGCCAACTCCTTGAAGCCTCAATTAGATGCACTTAACAAACTCATCACGGCAGTAGTAGAGATGACCAAGTCC ATGGTTGATCTCAAGGATCTTCCTTCCCACTACATTGGGGCTGACACACCTGCAATGTCTCTTGCTCTAGCTCATATCCCCATGGCTGTATATTGGGCTA TTCGGAGCATCGTGGTTTCTGCCACCCTCATTGCTAGAAATGAGTACAGTGATTCAACCAGTCAAGCATGGGAGCTGTCGAGCTTGACTCATAAGGCCGA CAACATCCATGGCCTCCTTAAGCAGCAGCTTGCCATCTGCTACCTGCATATAGATGAGAAGAAGCATGAAGAAGCATACCAAATTCTGGTGCGCCTATTC AAAACACATCAACTAGACAACATGAAGATACTCAAGTCGCTCATCTACCCCAATGATGATCAGCAACCACTGTTCCACGGTGCCACCAAGACAAAGGTTC ATGTTGAAGTACTTAAGAGGAAGCATGTCCTGCTACTGATATCAGATATGCGCATCTCGAACGAAGAGGTTATGGTGCTAGCTCATATGTACACAGAGGC ACAGGATACTTCAGAGTTCCACTATGAAATAGTATGGCTCCCAGTTGTAGGGGGCGAAAATTGGCAAGAAGCAGATGAGCGCAAATTCATGGAGCTCCAA TCGATCATGCCTTGGTACAGCATCATCCATCCATCGCTAATGCAACCTGCAGCGGTTAGGTACGTGAAGGAGATGTGGCATTTTAGCAAGAGGACCATTC TTGTGCCATTAGACCCAGCAGGAAAAGTGATGTCCACAAACGCATTCAACATGCTCTGGATATGGGGAAATCTTGCATTTCCTTTCACAATGGAGAGAGA GGAAACCCTTTGGAGAGCAGAAGATTGGACTCTCCAGCTGCTGGTTGACCGCATAGACATGAGCATCATGCAATGGGCAACGCAAGGGAAACTGATCTGC TTGTACGGCGGGGACGACATCGAGTGGATACGGAAATTCGCGGCGGCGACAAAAGAGGCGGCGAGTGCTTACGGGACGGAATTGGAAATGGTACACGTAG GAAAGAGCAACATTCCAAAGGAACGAATGACCAAAATCAATGCGGCTATCACATCGGAAGGGATGAGCCGTTGCTGGACCGATCCGACATCGGTTTGGTT GTTCTGGACGCGGCTGGAGAGCATGTTCTACTCCAAGATACAGGGAGGGAGGACGATGGAGAACGACCGGGTGCTGCAGGAAGTGATGACGCTGCTGAGT TTCGACGGCGGCGACGGAGGGTGGGCGGTGTTCTGCAGTGGGGAGGCGGAGATGGCGCGAGCAAAAGGGGAATTGGCTTTGGCGAGCATGGAAGACTATG AGAAGTGGGCGAACGTGGCGACGGAGATAGGGTTTGTGCCGGCGATTAGGAATTACCTGCAGGGGCTTCACACGCCGTTACATTGCAACAGGCTAATACT GCCGGGGAACGAAGGAGGGGTGCCGGACAGTGTGGTTTGTGCCGAGTGCGGACGCTCCATGGAGAAGTTCTTCATGTATCGTTGTTGTGTCGATTAG
AA sequence Show only first row Show all	>Lus10017777 pacid=23176349 polypeptide=Lus10017777 locus=Lus10017777.g ID=Lus10017777.BGIv1.0 annot-version=v1.0 MEGAQNQREKLMIKDMRMSRGSDDRDMMKQILASHSPDGRHFNVKPIIHVVEAILRRANSSIYHVLNGTQSEAVENLEDTSSPAGPDDNIEYLAYSIHTV ACEMSCKCSGGGDAHSTTLAVLESLKSYAWDAKVVISLAAFSVNYGEFHLVIQLLSVNPLAKSVAILKQLPDIIEQANSLKPQLDALNKLITAVVEMTKS MVDLKDLPSHYIGADTPAMSLALAHIPMAVYWAIRSIVVSATLIARNEYSDSTSQAWELSSLTHKADNIHGLLKQQLAICYLHIDEKKHEEAYQILVRLF KTHQLDNMKILKSLIYPNDDQQPLFHGATKTKVHVEVLKRKHVLLLISDMRISNEEVMVLAHMYTEAQDTSEFHYEIVWLPVVGGENWQEADERKFMELQ SIMPWYSIIHPSLMQPAAVRYVKEMWHFSKRTILVPLDPAGKVMSTNAFNMLWIWGNLAFPFTMEREETLWRAEDWTLQLLVDRIDMSIMQWATQGKLIC LYGGDDIEWIRKFAAATKEAASAYGTELEMVHVGKSNIPKERMTKINAAITSEGMSRCWTDPTSVWLFWTRLESMFYSKIQGGRTMENDRVLQEVMTLLS FDGGDGGWAVFCSGEAEMARAKGELALASMEDYEKWANVATEIGFVPAIRNYLQGLHTPLHCNRLILPGNEGGVPDSVVCAECGRSMEKFFMYRCCVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10017777 [exp]	0	1
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10002937 [exp]	1.4	0.8258
AT4G05160			AMP-dependent synthetase and l...		Lus10013831 [exp]	2.0	0.8355
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Lus10003789 [exp]	2.2	0.8055
AT2G04480			unknown protein		Lus10001750 [exp]	3.0	0.8255
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10000605 [exp]	4.6	0.7910
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10001465 [exp]	5.5	0.7957
					Lus10016642 [exp]	6.3	0.7538
AT4G04980			unknown protein		Lus10036173 [exp]	7.4	0.7762
AT5G57950			26S proteasome regulatory subu...		Lus10022151 [exp]	9.6	0.7494
AT5G66650			Protein of unknown function (D...		Lus10005312 [exp]	10.1	0.7561

Compare expression of checked genes

Lus10017777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.