Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06510 76 / 2e-14 ATRPA70A, ATRPA1A ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) AT2G05642 57 / 2e-08 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015932 [exp] 479 / 2e-168 AT2G05642 52 / 3e-07 Nucleic acid-binding, OB-fold-like protein (.1) Lus10018804 [exp] 387 / 1e-128 AT1G75050 171 / 4e-71 Pathogenesis-related thaumatin superfamily protein (.1) Lus10004507 [exp] 126 / 1e-34 ND / Lus10012660 [exp] 84 / 4e-18 ND 169 / 1e-48 Lus10036312 [exp] 66 / 3e-11 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10006548 [exp] 65 / 7e-11 AT5G08020 845 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10033436 [exp] 53 / 4e-07 AT2G06510 600 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Lus10007160 [exp] 47 / 2e-05 ND / Lus10033435 [exp] 46 / 5e-05 AT2G06510 426 / 4e-147 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G065300 [exp] 76 / 2e-14 AT2G06510 897 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Potri.019G061550 [exp] 57 / 1e-08 AT1G52950 76 / 2e-14 Nucleic acid-binding, OB-fold-like protein (.1) Potri.001G165480 [exp] 51 / 9e-07 AT1G52950 52 / 3e-07 Nucleic acid-binding, OB-fold-like protein (.1) Potri.003G004401 [exp] 49 / 2e-06 AT1G52950 50 / 9e-07 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF08646 [flax] [poplar] Rep_fac-A_C Replication factor-A C terminal domain CL0021 [flax] [poplar] OB PF02721 [flax] [poplar] DUF223 Domain of unknown function DUF223
Representative CDS sequence Show only first row Show all	>Lus10017778 pacid=23176338 polypeptide=Lus10017778 locus=Lus10017778.g ID=Lus10017778.BGIv1.0 annot-version=v1.0 ATGACGTTTGACTATATAGCTGAGATTGGTAAAAAGCTGATTAAATCTCCCTTGCAAGTAAGAGTTAGTCGTTCATGGATAGCCATCAACTCAAACAACA ATGCTGTGATGCACAGAGATTTCATTCTTATTGATGAGAAGGGTGACGACATTTGGGTTCAGATTCCTCACCGTCTTATGCATAATTTCTCACACCTCCT GACTGATCAGAAGGTGTATACTGTCGCTAATGCTAAAGTCATCAATGCGCCGAAGAAATTCCGTCCAATTCACAATCGGTTCGCCATTGAATTCACTCCT ACCACTGTAGTAGAGGTCATAGAAGATATACCATCTATTCCCCAATACAAATTTTCGTTCCTGAAGGCAGGCAAAATTCCGTCGGCCTTGCACAAACGCG AGCTACTTACAGATGTTATAGGATATGTGACAGAATATAAGACTCCTCAAAATGCACCAGCATATTCAGCAAGGGAAGAAATCACACTCCAAATGGCCAA GGTATTCTCAGTAAAAGTTTTGGTATGGGGAAGATTAAAGACGATGATGGATGGGCTATATGCGGCGAATGGGGATAAACCATTAGTCCTCATAATAACC TCTGTGTTTGTCCGAATATTTGATTCGAAAGATTGTCTCTCAACTTGTGGAGCAACACAACTTCTACCAAATCTCCAAATCCCTGAAGTTCTAGAATATA TTACAAGGGCAAACGATGACAAGTTGGATGCTGTTTTACCAGTTTACTCAGATCCAAATGACATTGGAAACAGTGATTCGGTAACCTTAGAAACGTTGAA TTCAAAAATATTGGAGGCAGAGAACCAGGAGAAGTATTTTATTGTGGATTGTATGATAAAAAGCATTAAAGATGCCTGGTGCGATGTCTGGTGCTATACT GGATGTGAAGTTTGTTCCAAGAAAGTTGAAGATGATGTCTCTGATTACTTCTGTTGTAAACTACTTAGGAAGGATGCAACGAAACGATTTCGTGTTCAAA TCGAAGTTGCAGACAATAAAGGCGAGGCAGACCTCATTCTTCTTGACTGTTTTGGTCAAGAACTTCTTGGGACAACAGCCAACAGGCTATATGAACTGAA CGGTAAAGACAGTAAAACTCCACCTGATCAGATAACAATTTTTGTTGGCAACAACATAAAAGCACAAGTTCAGGTAAACGCGTACAATATACGAACGGCG AGAAATGAATTTACAATCACCAAGATTCTAGCATCACCAATTGTTCAGACTCCTTCGACTCCCCAGTCCATTAAGAGTTGCATTTCTGGACAATCGTCGA TTGAGAAATCTGTTGAAGTTGCAGCAAGTTCTACCAAGAACAACGAAGTAGCTGCTATAAATTTGGAAGAAGCTCTTGAAGATGACCTTCTGGATGAAAA TGATCCCTCTGCCACCATCAATAAAGACCGTAAAAGGAAAATGGTTTGCGTAGATTCTGATGATTATTAG
AA sequence Show only first row Show all	>Lus10017778 pacid=23176338 polypeptide=Lus10017778 locus=Lus10017778.g ID=Lus10017778.BGIv1.0 annot-version=v1.0 MTFDYIAEIGKKLIKSPLQVRVSRSWIAINSNNNAVMHRDFILIDEKGDDIWVQIPHRLMHNFSHLLTDQKVYTVANAKVINAPKKFRPIHNRFAIEFTP TTVVEVIEDIPSIPQYKFSFLKAGKIPSALHKRELLTDVIGYVTEYKTPQNAPAYSAREEITLQMAKVFSVKVLVWGRLKTMMDGLYAANGDKPLVLIIT SVFVRIFDSKDCLSTCGATQLLPNLQIPEVLEYITRANDDKLDAVLPVYSDPNDIGNSDSVTLETLNSKILEAENQEKYFIVDCMIKSIKDAWCDVWCYT GCEVCSKKVEDDVSDYFCCKLLRKDATKRFRVQIEVADNKGEADLILLDCFGQELLGTTANRLYELNGKDSKTPPDQITIFVGNNIKAQVQVNAYNIRTA RNEFTITKILASPIVQTPSTPQSIKSCISGQSSIEKSVEVAASSTKNNEVAAINLEEALEDDLLDENDPSATINKDRKRKMVCVDSDDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10017778 [exp]	0	1

Compare expression of checked genes

Lus10017778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.