Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09730 722 / 0 RH39 RH39 (.1) AT1G55150 195 / 9e-55 DEA(D/H)-box RNA helicase family protein (.1) AT3G06980 197 / 7e-54 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 181 / 5e-49 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G01540 179 / 3e-48 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT1G16280 175 / 1e-47 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) AT3G18600 174 / 6e-47 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G60990 171 / 1e-46 DEA(D/H)-box RNA helicase family protein (.1) AT1G31970 172 / 2e-46 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT2G42520 170 / 5e-45 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015627 [exp] 189 / 3e-52 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10030075 [exp] 190 / 4e-52 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037646 [exp] 188 / 4e-52 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10039091 [exp] 189 / 1e-51 AT3G06980 654 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10000849 [exp] 185 / 1e-50 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031182 [exp] 181 / 6e-50 AT5G60990 674 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015977 [exp] 181 / 8e-50 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016207 [exp] 183 / 9e-50 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031761 [exp] 179 / 1e-49 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G198300 [exp] 768 / 0 AT4G09730 743 / 0.0 RH39 (.1) Potri.010G004700 [exp] 192 / 4e-53 AT3G06980 635 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.003G038300 [exp] 189 / 1e-52 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.013G158000 [exp] 189 / 5e-52 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G130900 [exp] 183 / 6e-50 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G007900 [exp] 183 / 1e-49 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G249100 [exp] 179 / 2e-49 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.003G217800 [exp] 178 / 8e-48 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G098800 [exp] 175 / 3e-47 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 176 / 4e-47 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10017781 pacid=23177727 polypeptide=Lus10017781 locus=Lus10017781.g ID=Lus10017781.BGIv1.0 annot-version=v1.0 ATGGCGATGGCTGCAGGTTCAAGAACGCTACTCCTCTCCCTCTCCCTCACCTCCGCAACCAAACTCCCCCGCTTCGCCCACCGCCGCCGACCACTTCTCG GGATTCCTAAACCGAGCAGGGTTTTACTAGGGTTTAACTTCAAACACCTCTGCACAGCTTCAGCCACAGCCACTCAATCTCCCGCCGCCGAAATAATCGA CCCGGAACAAGTGAGGCACGCCCTTCTCTTGGAGAGGCTCAGGACCCGACACCTCAAGGACTCCTCCTCCAAACCCCAAACCCGAGTTTCTTCTTCTGCC GTCGACGATTCAATTAGCAAGGCCGACAAGAGGGGCAAGAAGGCTTTGGTGGAGAGCTTTCAAGAGCTAGGTTTGACCGATGAGGTTGTTGAATCCCTTA AGGAGATGGGTATTCAGGTCCCTACTGAGATTCAATGTCTTGGGATACCTGCTGTTTTGGAAGGCCAGAGTCTATTCTTAGGTTCTCATACTGGCTCTGG AAAGACTCTCTCCTATTTACTGCCTATCGTTCAGTTGATAAGGCATGATGAGGCATTATCTGGCAGGATGATGAAGCCTAATCGTCCTCGAGCTATTGTT CTATGCCCCACTAGGGAGCTGTCTGAGCAGGTTTTTCGAGTGGCAAAGTCTATCAGCCATCATGCCCGGTTCAGGTCTACTATGGTCAGTGGTGGTGGCC GGTTGAGACCGCAAGAGGATTCACTTAGTAACCCTATCGATATGGTTGTCGGAACTCCTGGTAGGATCCTTCAACACATTGAGGAAGGGAATATTGTTTA TGGAGATATTAAGTATGTGGTTTTGGATGAGGCCGACACGATGTTTGATCGTGGTTTTGGTCCCGATATTCGTAAGTTTCTGGCTCCTTTGAAACACCGA GCATCGAAGGCAGATGGGCAAGGGTTTCAAACTGTTTTGGTTGCTGCTACTATGACAAAGGGAGTCCAAAGCCTAGTTGATGAAGAGTTTCAAGGCATAG TGCATTTACGCACATCAACACTGCATAGGAAGGTTGCCTCTGCTCGTCATGATTTCATAAAACTTGCAGGCTCCGAAAATAAGCTGGAAGCATTGCTACA GGTTCTTGAGCCAAGTTTGGCCAAGGGGAACAGGGTGATGGTCTTCTGCAATACTCTGGATTCTAGTCGTGCTGTTGATCATTTTCTTTCTGAGAATCGG ATGGCTACTGTTAATTATCACGGGGAGGTACCGGCAGCGCAGAGATTGCCAGAAACTCAGTTCCTCTTCCTCTTTAAACCAAGGGTTGAAAATCTCAAGA AGTTCAAAAGTGACGATGGTGATTGCCCCACATTGGTCTGCACAGACCTAGCTGCCAGGGGATTGGACTTGGATGTAGATCATGTTATTATGTTTGATTT TCCCTCAAATTCTGTTGATTATCTTCATCGCACTGGACGAACTGCTCGAATGGGTGCAAAAGGCAAAGTAACAAGCTTGGTGGCTAAGAAGGATGTACCA TTATCCTCACGTATTGAAGAAGCTATAAGGAAGAATGAGAGCTTGGAGTCCCTAACTATGGATGGGGTTCGGAGGGACAAGGCCAGGGCTCGAATAACTG AAAACAAAGGAAAGAGTGTTGTAAGAATGTCAAGAGCATCATCATCCGACCTGAAAGGAAAGAGTGTTGTAAAACTGTCAAGAACACCGTCCAACAACCA GAGTAACAACAAGACTAGATCTGCTGTGGATGTAAAATCTAACAAGGGGGGCCATGCAACTTCCACCAGACACTCTGGAAGAAAGTCTTCTCCGGTGGTG AAATCATCTGGCAGAGCAGTGAAGATTACTACAAAGACAATTAAGTCATATTCTAGGACCGCAAAGTCTTTTGGTGCCAAGAAACAAACTGGGAAGAGAA GTTCAAATGCAGTTCCAGAAAATAAGCTAAGTGTTGCAGCACTTAGAGGCCGCTCTTCCTCTACCAAGAGGGAACCTTCGAGGCTCAGTTGA
AA sequence Show only first row Show all	>Lus10017781 pacid=23177727 polypeptide=Lus10017781 locus=Lus10017781.g ID=Lus10017781.BGIv1.0 annot-version=v1.0 MAMAAGSRTLLLSLSLTSATKLPRFAHRRRPLLGIPKPSRVLLGFNFKHLCTASATATQSPAAEIIDPEQVRHALLLERLRTRHLKDSSSKPQTRVSSSA VDDSISKADKRGKKALVESFQELGLTDEVVESLKEMGIQVPTEIQCLGIPAVLEGQSLFLGSHTGSGKTLSYLLPIVQLIRHDEALSGRMMKPNRPRAIV LCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLSNPIDMVVGTPGRILQHIEEGNIVYGDIKYVVLDEADTMFDRGFGPDIRKFLAPLKHR ASKADGQGFQTVLVAATMTKGVQSLVDEEFQGIVHLRTSTLHRKVASARHDFIKLAGSENKLEALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHFLSENR MATVNYHGEVPAAQRLPETQFLFLFKPRVENLKKFKSDDGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSVDYLHRTGRTARMGAKGKVTSLVAKKDVP LSSRIEEAIRKNESLESLTMDGVRRDKARARITENKGKSVVRMSRASSSDLKGKSVVKLSRTPSNNQSNNKTRSAVDVKSNKGGHATSTRHSGRKSSPVV KSSGRAVKITTKTIKSYSRTAKSFGAKKQTGKRSSNAVPENKLSVAALRGRSSSTKREPSRLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09730		RH39	RH39 (.1)		Lus10017781 [exp]	0	1
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10009050 [exp]	1.0	0.9338
AT3G51140			Protein of unknown function (D...		Lus10041816 [exp]	1.4	0.9280
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Lus10031169 [exp]	2.4	0.9216
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Lus10031745 [exp]	3.2	0.9165
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10010711 [exp]	5.1	0.8930
AT1G30960			GTP-binding family protein (.1...		Lus10032427 [exp]	6.3	0.9059
AT5G01590			unknown protein		Lus10022672 [exp]	9.8	0.8897
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10024831 [exp]	9.9	0.9049
AT1G79050			recA DNA recombination family ...		Lus10026204 [exp]	11.4	0.8722
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Lus10037574 [exp]	11.5	0.8856

Compare expression of checked genes

Lus10017781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.