Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34110 1302 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 789 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 762 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G56040 702 / 0 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G26540 664 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 571 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 562 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 535 / 7e-172 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G65700 526 / 7e-170 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 520 / 8e-168 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000509 [exp] 1686 / 0 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10011756 [exp] 745 / 0 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10028612 [exp] 709 / 0 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10018911 [exp] 701 / 0 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10032954 [exp] 687 / 0 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10023677 [exp] 684 / 0 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10011576 [exp] 529 / 8e-173 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 526 / 1e-169 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011761 [exp] 523 / 2e-169 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G198000 [exp] 1416 / 0 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G063300 [exp] 1406 / 0 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G175700 [exp] 769 / 0 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G052500 [exp] 761 / 0 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.005G188700 [exp] 753 / 0 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.002G070900 [exp] 735 / 0 AT3G24240 1004 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G467300 [exp] 704 / 0 AT4G26540 1347 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.011G164800 [exp] 704 / 0 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.015G080800 [exp] 701 / 0 AT5G56040 1019 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.012G088100 [exp] 692 / 0 AT5G56040 1005 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10017782 pacid=23177699 polypeptide=Lus10017782 locus=Lus10017782.g ID=Lus10017782.BGIv1.0 annot-version=v1.0 ATGCAAATCCAGGATATGGGTGGTCACTCTCTTCTGCTGCTCCTGATTCCACTCCTCATTGTCACAGTTTCCTCCCTTTCCCCTGAAGGCCAAGCCCTCC TCCCTCTACTTTCATCTTCATCTTCATCTTCATCTTCATCTTGGAACCCTTTGGACCAAACCCCATGTTCATGGAAAGGTATTACATGCTCTGCTGATAA AAGAGTCATTTCTCTCTCTCTTCCACACACTTTCCTCAACCTCACTTCAATCCCTTCCCTTATCTCTTCCTTAACATATCTCCAGCTTCTAAATCTATCT TCCACTAACATCTCCGGACAAATCCCTCCTTCCTTAGGCCAGCTCTCTAACCTCAGGCTTCTTGACCTATCTTCCAACTCCCTCTCTGGCTCAATCCCTC AACAACTCGCCCAACTTTCCTCCCTTCAGTTTCTCTACTTGAACTCCAACATGTTATCTGGACAAATCCCTCCACAGCTCTCCAATCTCACTTCTCTACA ACTTCTTTGCCTCCAGGACAACTTGTTCAACTCTTCAATCCCTTCTCAATTCGGCTCACTGCTCTCTTTACAACAGTTGAGAGTTGGGGGTAACCCTTAT CTCTCAGGGGAGATCCCTCATCAGCTAGGGATGCTTTCCAATTTGACCACATTCGGGGCAGCCTCTACTCGACTTTCTGGTTGGATTCCTTCCACTTTTG GTAACTTGGTTAATCTCCAGACGCTGGCTCTTTACGATACTGACGTCTCTGGGTCTATTCCTGCTCAACTTGGTCAATGTTCTGAGTTGAGGAACTTGTA TTTGCATATGAATAAGCTCACTGGCTCTATCCCTTCTGAGTTGGGTAAGCTACAGAAGCTCACAAGCTTGCTTCTTTGGGGGAATGCCCTATCTGGTTCT ATTCCTTCTCAGCTTTCCAATTGTTCATCTCTAGTTGTGCTCGATGCTTCTGCTAATGATCTATCAGGTTCGATTCCTGGCGATTTGGGGAAGTTGGGAG CATTGGAACAGCTACATTTGTCGGATAATTCCCTTATTGGGTTGATTCCCAGACAGTTGAGTAACTGTACCAGCTTGACTGCACTTCAGCTGGATAAGAA CCAATTGTCTGGCACTATTCCAATGGAGGTTGGGAATTTGAACTACTTGCAGAGCTTTTTCTTGTGGGGGAACTCTGTTTCGGGTACTATTCCATCTTCT TTTGGGAACTGTACTGAGCTGTATGCGCTTGATTTGTCAAGGAATAAGCTCACTGGGTTGATTCCAGGGGAGATTTTTGGATTGCAGAAACTTAGTAAGC TTCTGTTGTTGGGGAACTCATTATCAGGAGGGCTGCCGAAAAGCGTGGCAAATTGTCAGTCTTTGGTGAGGTTAAGGCTTGGAGAGAACCAACTCTCTGG CCAGATTCCAAAAGAGATTGGCTTACTGCAGAATCTGGTTTTCCTCGACTTGTATATGAATAATTTCTTAGGTCCACTTCCTTATGAGATTTCCAATGTA ACAGTTCTTGAGCTGTTGGATGTGCACAACAACCACATTACTGGCGACATTCCTTATCAGTTAGGTCAGCTAGTAAACTTGGAGCAACTTGATCTTAGTA AGAACAGCTTTACCGGAGAAATACCACCGAGTTTCGGTAACTTGAGCTACTTGAACAAGCTGATCCTCAACGAAAATCTGCTTACTGGGACGATCCCTGG TTCAATCCGATACTTGCAGAAGCTGACATTGCTTGATTTGAGCTCCAACAATTTCTCTGGTAATCTCACACCAGAGATTGGATATGTCACCAGCTTGACA ATTAGTCTGGACTTGAGCAACAATGCATTTGCTGGAGAGCTTCCAAGCACAATGTTTGGATTGACACAGCTGCAGTCTCTTGATCTTTCCAGTAACATGC TTTTTGGAACAATTAAGGTTCTTGAATCCCTCACCAGCCTTGCCTCTTTAAATATCTCCGGCAACAATTTCTCAGGTCCTATTCCTATCACACCATTTTT CAGAACATTGTCTCCAAATTCTTATCTTGAGAATCCGAGTCTCTGTGAATCCATGGACGGCATTACTTGCTCATCTAGACTTGTAAGGAGAAATGGATTG AAATCTGCAAAAGCTATTGCACTGATAACAGTGATTATTGCTTCTTTAACTCTAGCAATACTTGCATCATGGATTGTAGTCTCAAGGAACCACCACAGAT TCATGGTGGATAACGAAGCTTCAGCCGCGTCGGTGGTTTCTTCTGTGGGAGCTGAAGACTTCTCATATCCTTGGACTTTCATCCCATTTCAGAAGCTCAA CTTCACCATTGATAACATCTTGGAATGCTTGAAGGATGAGAATGTGATTGGGAAAGGCTGTTCAGGAGTTGTCTACAAGGCCGAAATGCCCGGTGGTGAA CTAATTGCAGTTAAAAAGCTCTGGAAAACAAAGAAAGAAGACGACATAGTATTTGATTCATTTGCGGCGGAGATTCAAATACTGGGGCACATTCGACACA GAAACATAGTGAAGCTCTTGGGGTATTGTTCCAACAAAAGTGTCAAACTCTTACTTTACAACTACATATGCAATGGTAATCTGCAGCAGCTGTTGCAAGA CAACAGGAACTTAGAGTGGGAGAGAAGGTACAAGATTGCTGTTGGATCAGCGCAAGGACTGGCTTACCTTCACCACGATTGCGTCCCAGCAATCCTCCAC CGTGATGTCAAATGCAACAACATACTTCTAGATTCCAAATACGAAGCATATCTGGCTGATTTTGGCCTTGCCAAGCTCATGAACTCTCCAAATTACCACC ATGCCATGTCCCGTGTTGCAGGTTCTTATGGATACATTGCTCCAGAGTATGGATACACCATGAACATTACGGAAAAGAGCGATGTGTACAGCTACGGGGT GGTGTTGCTAGAGATATTAAGTGGGAGGAGTGCTGTTGAGCCGCAGATTGGAGATGGACTGCACATTGTTGAATGGGTGAAGAAGAAGATGGCGAGCTAC GAACCAGCCTCATCAATACTTGACGTAAAGCTTCAAGGGCTGCCAGACCAAATTGTACAAGAAATGCTTCAGACACTTGGGATTGCAATGTTCTGTGTGA ACTCTTCGCCTGCAGAGCGGCCGACGATGAAAGAAGTGATTGCATTGTTGATGGAAGTGAAGAGCACACCTGAAGAGTGGGGGAAGGGTACTTCTCAGCC CCTAATAAAACAGTCAGCAACCCAGAGTTGA
AA sequence Show only first row Show all	>Lus10017782 pacid=23177699 polypeptide=Lus10017782 locus=Lus10017782.g ID=Lus10017782.BGIv1.0 annot-version=v1.0 MQIQDMGGHSLLLLLIPLLIVTVSSLSPEGQALLPLLSSSSSSSSSSWNPLDQTPCSWKGITCSADKRVISLSLPHTFLNLTSIPSLISSLTYLQLLNLS STNISGQIPPSLGQLSNLRLLDLSSNSLSGSIPQQLAQLSSLQFLYLNSNMLSGQIPPQLSNLTSLQLLCLQDNLFNSSIPSQFGSLLSLQQLRVGGNPY LSGEIPHQLGMLSNLTTFGAASTRLSGWIPSTFGNLVNLQTLALYDTDVSGSIPAQLGQCSELRNLYLHMNKLTGSIPSELGKLQKLTSLLLWGNALSGS IPSQLSNCSSLVVLDASANDLSGSIPGDLGKLGALEQLHLSDNSLIGLIPRQLSNCTSLTALQLDKNQLSGTIPMEVGNLNYLQSFFLWGNSVSGTIPSS FGNCTELYALDLSRNKLTGLIPGEIFGLQKLSKLLLLGNSLSGGLPKSVANCQSLVRLRLGENQLSGQIPKEIGLLQNLVFLDLYMNNFLGPLPYEISNV TVLELLDVHNNHITGDIPYQLGQLVNLEQLDLSKNSFTGEIPPSFGNLSYLNKLILNENLLTGTIPGSIRYLQKLTLLDLSSNNFSGNLTPEIGYVTSLT ISLDLSNNAFAGELPSTMFGLTQLQSLDLSSNMLFGTIKVLESLTSLASLNISGNNFSGPIPITPFFRTLSPNSYLENPSLCESMDGITCSSRLVRRNGL KSAKAIALITVIIASLTLAILASWIVVSRNHHRFMVDNEASAASVVSSVGAEDFSYPWTFIPFQKLNFTIDNILECLKDENVIGKGCSGVVYKAEMPGGE LIAVKKLWKTKKEDDIVFDSFAAEIQILGHIRHRNIVKLLGYCSNKSVKLLLYNYICNGNLQQLLQDNRNLEWERRYKIAVGSAQGLAYLHHDCVPAILH RDVKCNNILLDSKYEAYLADFGLAKLMNSPNYHHAMSRVAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLEILSGRSAVEPQIGDGLHIVEWVKKKMASY EPASSILDVKLQGLPDQIVQEMLQTLGIAMFCVNSSPAERPTMKEVIALLMEVKSTPEEWGKGTSQPLIKQSATQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34110			Leucine-rich receptor-like pro...		Lus10017782 [exp]	0	1
AT3G59420		ACR4	crinkly4 (.1)		Lus10015956 [exp]	2.8	0.8929
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10032542 [exp]	3.7	0.9250
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Lus10040506 [exp]	4.2	0.8852
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Lus10038447 [exp]	4.7	0.8944
AT2G04540			Beta-ketoacyl synthase (.1)		Lus10033810 [exp]	7.1	0.8633
AT2G27130			Bifunctional inhibitor/lipid-t...		Lus10026768 [exp]	8.1	0.8670
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10019139 [exp]	8.8	0.8939
AT2G36350			Protein kinase superfamily pro...		Lus10035591 [exp]	8.8	0.8902
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10041566 [exp]	11.6	0.8927
AT5G35930			AMP-dependent synthetase and l...		Lus10020348 [exp]	12.7	0.8466

Compare expression of checked genes

Lus10017782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.