Plant FIBer expression Database

Lus10017783 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003770
[exp]
182 / 5e-59 ND /
Lus10008569
[exp]
175 / 4e-55 AT1G48120 50 / 6e-07 hydrolases;protein serine/threonine phosphatases (.1)
Lus10024253
[exp]
148 / 5e-45 AT1G48120 40 / 4e-04 hydrolases;protein serine/threonine phosphatases (.1)
Lus10004097
[exp]
140 / 2e-40 AT1G48120 61 / 4e-10 hydrolases;protein serine/threonine phosphatases (.1)
Lus10012774
[exp]
132 / 4e-39 ND 36 / 0.007
Lus10009245
[exp]
122 / 2e-36 ND 35 / 0.004
Lus10003842
[exp]
124 / 4e-35 AT1G48120 50 / 4e-07 hydrolases;protein serine/threonine phosphatases (.1)
Lus10027017
[exp]
117 / 5e-34 ND /
Lus10022177
[exp]
115 / 4e-33 ND 39 / 5e-04
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10017783 pacid=23177716 polypeptide=Lus10017783 locus=Lus10017783.g ID=Lus10017783.BGIv1.0 annot-version=v1.0
ATGGATTACTTGTATGGACCAACACCTCCGTGCGTCGACCCCGAGGCGATCGATGGAGAACTACTTTGGGGCGAGCGCAACCGACATCGAGCTTGTGAAA
TTTCCAACAATGAGACATGGTGGCAGGGTGAGGTCATGTTCTTGTTCGGACTGACGCAGAGGAATGAGCATGTGTGGGAGGAGATGGTTGATCAATACAT
AGGCCAGTGGGGGAGCAGATTTGACCACGTGGCCGTGAGTGATTACATCGACGACCCGGAGAGGTGGCACCTCCACGACAAGTACATGGTGTGGTACCTT
CGGTACACTCGACGGTGGAATTTCAGACGAGGGACAGTACCTCAGTCTATCATCGATGGGTTAGAGAACCTATATGTTAGGGTAGGTTCACAGAAGCAAC
TCGGCCGAGAGAACATCGATGCGATTCAGGAGTGTCTGCGTTCCATGAGGTACGCGAGCGGAGGCATGGAGCGTAGGCTTGATGACCCGGGGGGTCACCC
ACAGATGGCCCTCACTGGACTGATTTACATGGCCACCTCCGTCACAGCAGTGATCCCAACCACCTCTTTCACAACAGTGGGTCCCACAGATGGGTCACGA
TGGAGCCAGCACCTTGCGCCCACAGTGGGCTAG
AA sequence
>Lus10017783 pacid=23177716 polypeptide=Lus10017783 locus=Lus10017783.g ID=Lus10017783.BGIv1.0 annot-version=v1.0
MDYLYGPTPPCVDPEAIDGELLWGERNRHRACEISNNETWWQGEVMFLFGLTQRNEHVWEEMVDQYIGQWGSRFDHVAVSDYIDDPERWHLHDKYMVWYL
RYTRRWNFRRGTVPQSIIDGLENLYVRVGSQKQLGRENIDAIQECLRSMRYASGGMERRLDDPGGHPQMALTGLIYMATSVTAVIPTTSFTTVGPTDGSR
WSQHLAPTVG

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10017783
[exp]
0 1
AT3G57270 BG1 "beta-1,3-glucanase 1", beta-1... Lus10000843
[exp]
4.2 1.0000
AT2G38500 2-oxoglutarate (2OG) and Fe(II... Lus10006093
[exp]
5.2 1.0000
Lus10002413
[exp]
5.5 1.0000
AT4G13090 XTH2 xyloglucan endotransglucosylas... Lus10025919
[exp]
7.7 1.0000
AT3G11180 2-oxoglutarate (2OG) and Fe(II... Lus10023602
[exp]
8.4 1.0000
AT4G22756 ATSMO1-2, ATSMO... sterol C4-methyl oxidase 1-2 (... Lus10028908
[exp]
10.8 1.0000
AT5G35750 AHK2 histidine kinase 2 (.1) Lus10009736
[exp]
11.0 1.0000
AT2G36870 XTH32 xyloglucan endotransglucosylas... Lus10013823
[exp]
11.7 1.0000
Lus10027374
[exp]
12.1 1.0000
AT3G21720 ICL isocitrate lyase (.1) Lus10031552
[exp]
12.7 1.0000

Lus10017783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.