Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01630 498 / 5e-161 BRCA2(V), ATBRCA2(V), BRCA2(V), ATBRCA2(V), BRCA2B, BRCA2(V), ATBRCA2(V), BRCA2(V), ATBRCA2(V), BRC BRCA2-like B (.1) AT4G00020 471 / 7e-151 BRCA2(IV), BRCA2(IV), BRCA2(IV), BRCA2A, BRCA2(IV), MEE43, EDA20, BRCA2(IV), BRCA2(IV), BRCA2(IV), MATERNAL EFFECT EMBRYO ARREST 43, EMBRYO SAC DEVELOPMENT ARREST 20, BREAST CANCER 2 like 2A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002857 [exp] 1036 / 0 AT4G00020 851 / 0.0 MATERNAL EFFECT EMBRYO ARREST 43, EMBRYO SAC DEVELOPMENT ARREST 20, BREAST CANCER 2 like 2A (.1.2) Lus10000316 [exp] 745 / 0 AT5G01630 540 / 0.0 BRCA2-like B (.1) Lus10000317 [exp] 378 / 4e-122 AT5G01630 305 / 7e-92 BRCA2-like B (.1) Lus10001602 [exp] 99 / 5e-23 ND / Lus10010609 [exp] 91 / 8e-20 ND / Lus10012228 [exp] 72 / 3e-19 AT5G01630 71 / 1e-10 BRCA2-like B (.1) Lus10009735 [exp] 84 / 4e-19 ND / Lus10017810 [exp] 85 / 9e-19 AT1G48120 46 / 8e-06 hydrolases;protein serine/threonine phosphatases (.1) Lus10003103 [exp] 81 / 1e-17 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G189600 [exp] 578 / 0 AT5G01630 1131 / 0.0 BRCA2-like B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF09103 [flax] [poplar] BRCA-2_OB1 BRCA2, oligonucleotide/oligosaccharide-binding, domain 1
Representative CDS sequence Show only first row Show all	>Lus10017785 pacid=23177691 polypeptide=Lus10017785 locus=Lus10017785.g ID=Lus10017785.BGIv1.0 annot-version=v1.0 ATGCAAAAGAATTTTACATACCCACCAAAAGCATCTTCAAACCGTTTTCAATCTGCGTTCAACAAGGGAATAGTTCTGTTTGGGAGCAACTTGATCATGC AATTTGATGCTGTTGACAATGATCGTGCTTGTGGGTCAAATCACAATGTAAATATGGAGAACAGTTTTCTGAGTAATAGGCCCTATATAAGTGGTCAAGC GAGAGACATTTCTTCAGGGGATAGCACTAATTCAAATACTAATCAACTTCCGAGGCCATGTCGCAGGCCGTTGGTTCATATCTCTAACGCTATGCAGATA AATTCAGCAAATAATGGACAACTCAGCAGCGAAAAGAGGAGACGGAGAAGTGTTTCAGTTTCTCCGTTCAAGAGGCCACGAAATTCTAAGTTTATCACCC CTTTGAGCAAGAATCCCTGCCCCAGTGCATACTGTCCCAGAAGAAGGGTCTGCACCAAGTACCCTATTCAAACTTCAAGGATGCAAATAAAAGAATACTT CGGCGTGCCACTTCCTCACCAGAAGAAGTTGAAAGAGCAAGTAGCAGGTATTAGATCCGACAATGCACCTAATTATTTATTTCCTGATCATTCTGGCACA AATTGCATCGGGTTAGAAGCTCTTCGCAGCACGCTCGTTCAGTCAGGAGCTTCTGAGCAATGTGCTTCCGAAGAATACGAAAGAGAAATGAATCATGGAT ACCGATCTGCACTCAAGAGGGTTCTTGAAGGCGATGTACCTCCTTCCTCGATGATGATCCTGTGCATTTCTGCCGTTTATGCTAGTTCTGAAGCAGAGAC CGAAGATTATCCCCCAGTTCTAAACAACGGGCATCAAGGTGCTTCTGTGGCGAGGATACAGCTGACCGATGGATGGTATGGAGTGGATGCCCTTTTAGAT GACCCGTTGTCTAAGCATCTTTCTACTGGAAAGCTTTTTTTCAAAGTTTTCCTTGTGAAGATATGGGGAGCAGGATTGTCTGGATGGGTCAACCCGGTTT CACCGCTTGAGGCATCAAAAGCTGTTAGTTTGCTGTTACATATAAATGGAACGTATAGAGCTCATTGGGCTGATCGACTTGGTTTGTGTAAGAGAAGTGG TGCTCCTTTGGCCTTCAGTTGTATCAAGAGTAATGGAGGCTCTGTCCCTCATACGTTTCCTGCAGGTGGATCTATAGTGAGGCCAGAGAGAATGGAGGCT AAGATGATAAAAGTATTTAACGACAGTGATAGTGAAGAAGGTGCAAAGCTTTTCAAAATTCTGGAGACGTCAGCTGAACCAGAACTTCTAATGGCAGGGA TGAGCTCAGAGCAACTTGCTAGTTTCGTTTCTTATCAGGAAAAGGTCCAGGCCGCCAAACAAATGAACGTGGACAAAGCAATCCAGAAAGCTCTGCAAGA GGCTCGCTTAGAGAAGAGAGAGGTGACCCCCTTTATGAGGGTTAGAGTGGTCAGTTTAACTACTTCTCGTGGAGGAACTTGCCGTCCAAAAGAAGGACTT GTACCAGTGACCTTTGATTCAAATACCCTTTACTTGCAAGCAAGAAGTTCCGGAAACAAATGGAAACCTTTGTCTCCTGCTCAGACCCAAAATTTCGAGC CATTCCGTCCTCGGATATCAATCTCGTTATCAAACATGGGTGCACTTGCATTTGGCAGGTTTATGGAACCGGTGCATTCGAAACAGTGGGTGTTTGGAAC TGACAACTCCATCTCCACATTGAATTCAGAGGCAGCAAATTCCTTACTAGTCTTAAGCTTCAACGCCTCTTCCATAGACAAGGATTCAGCTGCACCAGTC AACCACAATGTAGCAGGATCAATTGTTGGCTTTTGCAACATTATCAAGCGAAACAAAGATGAGAGAAACCAGTTATGGGTAGCTGAAGCAACTGAAAACT CAACTTACTATCTTAACTTTGACTCCTCGAACTGCTCCCACCTCAGAAAGACCGCTGTCTCCGTTCAAAACTGGACCAAGACTTCTACCTCGGTCAGCTG CTTACATCCACCTATCGTACCTACTAGTATTGCGAGAGGAGAGACCGTTCGATTGGGGGTAGTGGTTCTGTCGTGGCTCTATTGGGAGCTCGACCGTTCA GCGTTCAAGCTAGAGTCTACTGCTATGAAGGGGGCCGATGACATCGGTGGTTGGACTGTGCTGCTTACAACTTTGGCATTGGAGAGGTTCCCGACCATAA CACGACGATTGCACGAGGAGTACATGGTCGGTGGTCTTCAAGATGTGGGACAGTACAACAGTCCATCCTTTCGCGCCCCGCAGTACCAGTCGGCGATGGA GCCGCAGCAGTGGTCCCAGCCACCTCCATCACAGCAGTGGTCCCAGCCACCTCCGTCACAGCAGTGGTTTCCCCAGATTAGTCACGATGGAGCCAGCAGC TCACACCCACAGTGA
AA sequence Show only first row Show all	>Lus10017785 pacid=23177691 polypeptide=Lus10017785 locus=Lus10017785.g ID=Lus10017785.BGIv1.0 annot-version=v1.0 MQKNFTYPPKASSNRFQSAFNKGIVLFGSNLIMQFDAVDNDRACGSNHNVNMENSFLSNRPYISGQARDISSGDSTNSNTNQLPRPCRRPLVHISNAMQI NSANNGQLSSEKRRRRSVSVSPFKRPRNSKFITPLSKNPCPSAYCPRRRVCTKYPIQTSRMQIKEYFGVPLPHQKKLKEQVAGIRSDNAPNYLFPDHSGT NCIGLEALRSTLVQSGASEQCASEEYEREMNHGYRSALKRVLEGDVPPSSMMILCISAVYASSEAETEDYPPVLNNGHQGASVARIQLTDGWYGVDALLD DPLSKHLSTGKLFFKVFLVKIWGAGLSGWVNPVSPLEASKAVSLLLHINGTYRAHWADRLGLCKRSGAPLAFSCIKSNGGSVPHTFPAGGSIVRPERMEA KMIKVFNDSDSEEGAKLFKILETSAEPELLMAGMSSEQLASFVSYQEKVQAAKQMNVDKAIQKALQEARLEKREVTPFMRVRVVSLTTSRGGTCRPKEGL VPVTFDSNTLYLQARSSGNKWKPLSPAQTQNFEPFRPRISISLSNMGALAFGRFMEPVHSKQWVFGTDNSISTLNSEAANSLLVLSFNASSIDKDSAAPV NHNVAGSIVGFCNIIKRNKDERNQLWVAEATENSTYYLNFDSSNCSHLRKTAVSVQNWTKTSTSVSCLHPPIVPTSIARGETVRLGVVVLSWLYWELDRS AFKLESTAMKGADDIGGWTVLLTTLALERFPTITRRLHEEYMVGGLQDVGQYNSPSFRAPQYQSAMEPQQWSQPPPSQQWSQPPPSQQWFPQISHDGASS SHPQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10017785 [exp]	0	1
AT1G13570			F-box/RNI-like superfamily pro...		Lus10034418 [exp]	1.7	0.8514
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042901 [exp]	2.0	0.8674
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10037073 [exp]	3.5	0.8241
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10038644 [exp]	3.7	0.8593
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10000831 [exp]	7.4	0.7507
AT2G04940			scramblase-related (.1)		Lus10004532 [exp]	9.2	0.8171
AT2G22530			Alkaline-phosphatase-like fami...		Lus10035939 [exp]	12.1	0.7330
					Lus10028270 [exp]	12.4	0.7928
AT3G27390			unknown protein		Lus10014881 [exp]	16.4	0.7799
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10017847 [exp]	19.4	0.7584

Compare expression of checked genes

Lus10017785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.