Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00020 129 / 2e-33 BRCA2(IV), BRCA2(IV), BRCA2(IV), BRCA2A, BRCA2(IV), MEE43, EDA20, BRCA2(IV), BRCA2(IV), BRCA2(IV), MATERNAL EFFECT EMBRYO ARREST 43, EMBRYO SAC DEVELOPMENT ARREST 20, BREAST CANCER 2 like 2A (.1.2) AT5G01630 119 / 4e-30 BRCA2(V), ATBRCA2(V), BRCA2(V), ATBRCA2(V), BRCA2B, BRCA2(V), ATBRCA2(V), BRCA2(V), ATBRCA2(V), BRC BRCA2-like B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000317 [exp] 384 / 7e-132 AT5G01630 305 / 7e-92 BRCA2-like B (.1) Lus10002857 [exp] 290 / 1e-90 AT4G00020 851 / 0.0 MATERNAL EFFECT EMBRYO ARREST 43, EMBRYO SAC DEVELOPMENT ARREST 20, BREAST CANCER 2 like 2A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G189600 [exp] 180 / 3e-51 AT5G01630 1131 / 0.0 BRCA2-like B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00634 [flax] [poplar] BRCA2 BRCA2 repeat
Representative CDS sequence Show only first row Show all	>Lus10017786 pacid=23177722 polypeptide=Lus10017786 locus=Lus10017786.g ID=Lus10017786.BGIv1.0 annot-version=v1.0 ATGTGTGGCCTCCAGAAACCTTATCTCGAAATTTCTATCTCCAACCCTAGGTGGCCGCCCTCACTCTTTCGAATCCCTGATATCCCCAAGTCATGGCCGC CTCTCATCGATCTCCAGTTTCCGGATCGACTAGACTTTCCTCCTCTAGGTTTCGAAGACGGCAACACTGATAATGGTTATGACTTAGAATCCCTTGGGGT GACAAAGCTTCTTGAGAACGGTAATGACGAAGAAGGAAGTGCGATGTTTCGAACTGGATCAGGAAAATCCGTCGTGCTAAAACAATCTTCGATTTCCAAA GCGTTGTCAGTTCTCGGTGATAAGGATTTCATCGGCTCCCGGGAAGCAACTAATAGAGGACCACCTGACTGTTTCTCCAATTCGCTTTTCCAAACTGCCT CTGGGAAATCAGTTGGTCTATTGTCTACTGGTCTTGTCAGAGCTAGGACTTTGTTGGGTATGGAAGAAGATGGAGACGACTCTTCTAGTTTTGATCGATT TCAATGTCCACAAAGACCATCATCTACAAAAGAGTGGCAGAGTTTAAATCATATGGGGATGAGAGATAGTCCGACCAAGGATGTTGCAATGTCCAATTGC AGTCCTGCCTTGACTTATAAAATTGGGTTTGCAGGAAGCAGACCAAAGAACGAGTTTACTCCAAACTCGTTGCAGTCAAAAGTTTCTGATCCAGCTGCTA AACCTCCTCCACTGAAGTTTCAGACAGCTGGTGGTAGATCCTTATCTGTTTCTAGTGATGCATTGGAGCGTGCTAGAAGCCTTCTTGGGGATCCAGACTT TGGGCAGTTTCTTCAGTGA
AA sequence Show only first row Show all	>Lus10017786 pacid=23177722 polypeptide=Lus10017786 locus=Lus10017786.g ID=Lus10017786.BGIv1.0 annot-version=v1.0 MCGLQKPYLEISISNPRWPPSLFRIPDIPKSWPPLIDLQFPDRLDFPPLGFEDGNTDNGYDLESLGVTKLLENGNDEEGSAMFRTGSGKSVVLKQSSISK ALSVLGDKDFIGSREATNRGPPDCFSNSLFQTASGKSVGLLSTGLVRARTLLGMEEDGDDSSSFDRFQCPQRPSSTKEWQSLNHMGMRDSPTKDVAMSNC SPALTYKIGFAGSRPKNEFTPNSLQSKVSDPAAKPPPLKFQTAGGRSLSVSSDALERARSLLGDPDFGQFLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10017786 [exp]	0	1
AT1G62680			Pentatricopeptide repeat (PPR)...		Lus10025942 [exp]	24.4	0.7680
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10022401 [exp]	56.3	0.7634
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10003427 [exp]	60.6	0.7430
AT2G32630			Pentatricopeptide repeat (PPR-...		Lus10042016 [exp]	65.0	0.7568
AT5G54090			DNA mismatch repair protein Mu...		Lus10015589 [exp]	78.6	0.7550
AT3G17310		DRM3, AtDRM3	domains rearranged methyltrans...		Lus10043099 [exp]	89.8	0.7476
AT2G34970			Trimeric LpxA-like enzyme (.1)		Lus10018991 [exp]	93.4	0.7528
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028199 [exp]	98.5	0.7504
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Lus10003429 [exp]	99.1	0.6945
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10000051 [exp]	101.9	0.7486

Compare expression of checked genes

Lus10017786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.