Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00330 437 / 1e-150 CRCK2 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) AT5G58940 357 / 4e-118 CRCK1 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) AT2G11520 310 / 3e-99 CRCK3 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) AT1G79620 226 / 2e-64 Leucine-rich repeat protein kinase family protein (.1) AT1G30570 219 / 2e-62 HERK2 hercules receptor kinase 2 (.1) AT3G46290 214 / 1e-60 HERK1 hercules receptor kinase 1 (.1) AT5G59700 214 / 2e-60 Protein kinase superfamily protein (.1) AT1G06840 213 / 6e-60 Leucine-rich repeat protein kinase family protein (.1) AT1G70460 209 / 1e-59 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G49270 209 / 1e-59 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018828 [exp] 665 / 0 AT4G00330 471 / 2e-165 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10036376 [exp] 543 / 0 AT4G00330 474 / 1e-166 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10014760 [exp] 522 / 2e-174 AT4G00350 703 / 0.0 MATE efflux family protein (.1) Lus10040704 [exp] 381 / 8e-128 AT5G58940 418 / 3e-143 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Lus10018203 [exp] 381 / 1e-121 AT3G46980 689 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10041796 [exp] 338 / 4e-112 AT2G11520 498 / 2e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10028613 [exp] 333 / 3e-108 AT2G11520 540 / 0.0 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10018913 [exp] 316 / 5e-101 AT2G11520 520 / 0.0 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10028347 [exp] 285 / 5e-90 AT2G11520 435 / 3e-149 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G087200 [exp] 491 / 3e-171 AT4G00330 488 / 7e-172 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.002G161600 [exp] 483 / 4e-168 AT4G00330 479 / 2e-168 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.009G041900 [exp] 377 / 2e-126 AT5G58940 412 / 3e-141 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Potri.006G064200 [exp] 338 / 2e-110 AT2G11520 508 / 2e-177 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.018G124600 [exp] 334 / 1e-108 AT2G11520 502 / 6e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.016G144100 [exp] 243 / 3e-70 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G114400 [exp] 239 / 8e-69 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G032100 [exp] 213 / 4e-64 AT1G52540 451 / 3e-159 Protein kinase superfamily protein (.1) Potri.004G232500 [exp] 224 / 1e-63 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G090200 [exp] 219 / 1e-63 AT5G02070 783 / 0.0 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10017787 pacid=23177708 polypeptide=Lus10017787 locus=Lus10017787.g ID=Lus10017787.BGIv1.0 annot-version=v1.0 ATGACGAAAATAATCTTTGATTGTTGGATACAAAATCGGCTCTACGGAGCCATAACAATTTCGGGCAAAACCAGGACACGTCCCATTACGATCCCCTGCT TCGTCAAATTTCAGCCACGTCCTCATCTCAAATTTAATCCCCCATGGCCCCACGGCCCCACGGCTCACGTTAGCAACTACCCCACTAGCTCTAGCTCACT AACAGTCGCCCTCTTTGAAAATTCAAAGTCTACACTTCCTTCCTTCCTTGCTTCTCCTCCTCATCCCCCCCGCCATTTTCCAGCATTGTTTGGTTTTTTA CTAATGAAAAGTCCTCCGTCGCACCGGAACCCCAACTCCGGCTCCCGCTCCCGCTCAACCTCAGCCATCCTTCCTCCTGACGCCTCCTACTGCCAACCTT CCTCCGTCAAGAACCGGAGGACCCCCTTCAGATCACTACTCTCCTCCTTCTTCTCCTCTTGCTTCTCCTCCCCTCCCGACCCCGACGCTTCCCGTAACTT CCCTGACTCTGATGACTCCAAATCTCGTTACCTTACGTCGGATGCTTGGGATTCCAGTAGAGGAAGGAGACGAAGCACCGGTGGGAGCAGTATCTACGGA AGCCCACAGAGTTCAACCCACAAGCGAGAGCCAGGGAATATGAAATTCACCATTGATGAAATCTACAGAGCCACCAAGGCGTTCTCCCCTTCTTTTAAGA TCGGACAAGGCGGCTATGGCACCGTCTACAAAGGCAAGCTCGACGATGGGACCGTTGTCGTCGTCAAGCGTGCTAAGAAGAGCGTGCACGATAAGCATTT AGGTGCGGAGTTTCGAAGCGAAGTTCAGACCCTAGCCCAAATTGAGCATTTGAATTTAGTAAAGTTCTTTGGGTTGTTGGAGCATGAAGATGAAAAAATT ATTGTTTTGGAATATGTTCCTAATGGGACGCTTAGAGAACATCTAGATTGTAAGCACGGAACTGTTCTTGACCTTTCTGCACGCTTGGATATCGCCATTG ATGTTGCTCATGCTGTCACCTATCTACATATGTACACTGATCGTCCGATAATTCACAGGGACATCAAGTCTTCCAACATTCTATTAACAGAGAACTTCCG TGCTAAGGTTGCTGATTTTGGATTTGCTAGACTGGTGGCTGATTCTGAATCAGAAGCTACTCATATCTCCACCCAAGTAAAAGGGACTGCAGGTTATTTG GATCCAGAGTACCTCAGAACTTATCAGCTTACTGAGAAGAGCGATGTATATTCCTTTGGTGTCTTACTGGTGGAGCTAGTAAGTGCCAGGCGGCCCATCG AACCAAAACGCGAGCTGAGGGAGCGGATCATCACAAGATGGGCGATGAAGAAGTTTAGTGACGGGAGTGCAAGTTCCATATTGGACCCAAACTTAGAACA CAATGATGCAAACCACTTGGTACTTGAAAAGATTCTGGAACTGTCATTGTTGCAATGTCTGGCTCCTCACAGACAGAAGCGGCCAAGCATGAGGAAGTGC GCAGAGGTGCTTTGGGGTATCCGCAGAGATTACAAAGAACTTGCAGCTCTAGAGATACCTTCACTGTCCTCAAATTCTCGGCGGGGTTCTGCCCGATCTG CACTGCCATGA
AA sequence Show only first row Show all	>Lus10017787 pacid=23177708 polypeptide=Lus10017787 locus=Lus10017787.g ID=Lus10017787.BGIv1.0 annot-version=v1.0 MTKIIFDCWIQNRLYGAITISGKTRTRPITIPCFVKFQPRPHLKFNPPWPHGPTAHVSNYPTSSSSLTVALFENSKSTLPSFLASPPHPPRHFPALFGFL LMKSPPSHRNPNSGSRSRSTSAILPPDASYCQPSSVKNRRTPFRSLLSSFFSSCFSSPPDPDASRNFPDSDDSKSRYLTSDAWDSSRGRRRSTGGSSIYG SPQSSTHKREPGNMKFTIDEIYRATKAFSPSFKIGQGGYGTVYKGKLDDGTVVVVKRAKKSVHDKHLGAEFRSEVQTLAQIEHLNLVKFFGLLEHEDEKI IVLEYVPNGTLREHLDCKHGTVLDLSARLDIAIDVAHAVTYLHMYTDRPIIHRDIKSSNILLTENFRAKVADFGFARLVADSESEATHISTQVKGTAGYL DPEYLRTYQLTEKSDVYSFGVLLVELVSARRPIEPKRELRERIITRWAMKKFSDGSASSILDPNLEHNDANHLVLEKILELSLLQCLAPHRQKRPSMRKC AEVLWGIRRDYKELAALEIPSLSSNSRRGSARSALP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10017787 [exp]	0	1
AT4G36550			ARM repeat superfamily protein...		Lus10041754 [exp]	1.0	0.8691
					Lus10007298 [exp]	6.8	0.8460
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009684 [exp]	10.0	0.7954
					Lus10038131 [exp]	12.8	0.7727
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10014337 [exp]	17.9	0.8220
AT4G24290			MAC/Perforin domain-containing...		Lus10015324 [exp]	19.8	0.7725
AT5G01750			Protein of unknown function (D...		Lus10009094 [exp]	21.4	0.7797
AT2G45910			U-box domain-containing protei...		Lus10017798 [exp]	22.0	0.8305
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Lus10013121 [exp]	22.4	0.8362
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10011012 [exp]	22.8	0.7847

Compare expression of checked genes

Lus10017787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.