Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00335 203 / 4e-67 RHB1A RING-H2 finger B1A (.1.2.3) AT5G41350 142 / 9e-43 RING/U-box superfamily protein (.1) AT5G15790 91 / 2e-22 RING/U-box superfamily protein (.1.2) AT5G38895 89 / 4e-22 RING/U-box superfamily protein (.1.2.3) AT3G02290 88 / 2e-21 RING/U-box superfamily protein (.1.2) AT4G23450 75 / 3e-17 AIRP1, AtAIRP1 ABA Insensitive RING Protein 1, RING/U-box superfamily protein (.1.2.3) AT5G22000 63 / 6e-12 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) AT4G14220 61 / 7e-11 RHF1A RING-H2 group F1A (.1) AT5G47610 52 / 2e-08 RING/U-box superfamily protein (.1) AT1G17970 53 / 3e-08 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024635 [exp] 141 / 1e-42 AT5G41350 178 / 7e-57 RING/U-box superfamily protein (.1) Lus10032270 [exp] 140 / 9e-42 AT5G41350 192 / 2e-61 RING/U-box superfamily protein (.1) Lus10005084 [exp] 86 / 6e-21 AT5G38895 224 / 8e-75 RING/U-box superfamily protein (.1.2.3) Lus10034367 [exp] 76 / 9e-17 AT5G38895 215 / 2e-70 RING/U-box superfamily protein (.1.2.3) Lus10004636 [exp] 68 / 1e-14 AT5G41350 74 / 3e-17 RING/U-box superfamily protein (.1) Lus10029351 [exp] 67 / 5e-13 AT5G22000 270 / 7e-89 RING-H2 group F2A (.1.2.3) Lus10016195 [exp] 66 / 7e-13 AT5G22000 276 / 2e-91 RING-H2 group F2A (.1.2.3) Lus10013374 [exp] 66 / 8e-13 AT5G22000 397 / 7e-137 RING-H2 group F2A (.1.2.3) Lus10008447 [exp] 63 / 1e-11 AT5G22000 397 / 4e-137 RING-H2 group F2A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G087000 [exp] 281 / 9e-97 AT4G00335 222 / 2e-73 RING-H2 finger B1A (.1.2.3) Potri.002G161500 [exp] 247 / 2e-83 AT4G00335 159 / 8e-49 RING-H2 finger B1A (.1.2.3) Potri.001G101700 [exp] 152 / 1e-46 AT5G41350 142 / 2e-42 RING/U-box superfamily protein (.1) Potri.003G129900 [exp] 148 / 8e-45 AT5G41350 146 / 6e-44 RING/U-box superfamily protein (.1) Potri.004G114800 [exp] 94 / 1e-23 AT5G15790 246 / 6e-83 RING/U-box superfamily protein (.1.2) Potri.017G100100 [exp] 92 / 8e-23 AT5G15790 230 / 6e-76 RING/U-box superfamily protein (.1.2) Potri.010G140300 [exp] 86 / 7e-21 AT5G38895 129 / 4e-37 RING/U-box superfamily protein (.1.2.3) Potri.001G068700 [exp] 84 / 7e-20 AT5G38895 161 / 1e-49 RING/U-box superfamily protein (.1.2.3) Potri.003G161600 [exp] 83 / 2e-19 AT5G15790 167 / 2e-51 RING/U-box superfamily protein (.1.2) Potri.016G066400 [exp] 67 / 2e-13 AT5G22000 386 / 4e-133 RING-H2 group F2A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10017788 pacid=23177698 polypeptide=Lus10017788 locus=Lus10017788.g ID=Lus10017788.BGIv1.0 annot-version=v1.0 ATGGGAGGTTGCTGTTGTTCCTCCAGGAAGCCCCATTTGCATGGAACTCCTGTTTATTATTATTGTTCACCATCTCTGGAAGAGCATGGCTCCCTGATAT CTCATGGTGGTGCAACCTCTGCATTCACCGCTGGTCTCCTTGTTGAATTGAATTTGAATACATCGACTCCTGATACTTTCCGGCCTCCACCAGCTCCCTT GCCATATGATGTGGTGTTTGGAGGTCCACCGTCTTCGGATTCTGAGTCTCTCAGAGAAACAATAAGCAGGGATAGTTTTGAAACTTTAGAAATGGATGAA GATCCTGTGGAACCAGACGGTAAAATTCAAGCTAGTTCACTGCCGGTCTCCCCACGGAAGTCAAAAGTAATAAGAGCAGATGAACCAGTTTCCTTGGCTG CAGAAGAAGATGACGGTTGTCCCATTTGTCTTGAAGAGTATGACCGAGAGAATCCAAAACTCAACACAAAGTGTGAGCACCACTTTCATTTGCCATGCCT TCTGGAGTGGATGGAAAGAAGTGATACCTGTCCCATGTGCGATCAGGTTGTAGATTTAGGTGGTGTTAAGGAGTAG
AA sequence Show only first row Show all	>Lus10017788 pacid=23177698 polypeptide=Lus10017788 locus=Lus10017788.g ID=Lus10017788.BGIv1.0 annot-version=v1.0 MGGCCCSSRKPHLHGTPVYYYCSPSLEEHGSLISHGGATSAFTAGLLVELNLNTSTPDTFRPPPAPLPYDVVFGGPPSSDSESLRETISRDSFETLEMDE DPVEPDGKIQASSLPVSPRKSKVIRADEPVSLAAEEDDGCPICLEEYDRENPKLNTKCEHHFHLPCLLEWMERSDTCPMCDQVVDLGGVKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00335		RHB1A	RING-H2 finger B1A (.1.2.3)		Lus10017788 [exp]	0	1
AT4G18975			Pentatricopeptide repeat (PPR)...		Lus10009120 [exp]	1.4	0.8973
AT1G04530		TPR4	tetratricopeptide repeat 4, Te...		Lus10000257 [exp]	4.9	0.8847
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Lus10028115 [exp]	6.0	0.8904
AT1G27060			Regulator of chromosome conden...		Lus10037219 [exp]	6.5	0.8954
AT5G55860			Plant protein of unknown funct...		Lus10022531 [exp]	9.9	0.9104
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10019411 [exp]	12.1	0.8688
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10040394 [exp]	13.0	0.8910
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10034702 [exp]	18.0	0.8516
AT2G36950			Heavy metal transport/detoxifi...		Lus10032245 [exp]	20.8	0.8619
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10022447 [exp]	21.6	0.8924

Compare expression of checked genes

Lus10017788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.