Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45970 464 / 4e-163 CYP86A8, LCR LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) AT4G00360 452 / 3e-158 ATT1, CYP86A2 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) AT1G01600 442 / 2e-154 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1) AT1G63710 414 / 1e-143 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) AT5G58860 335 / 1e-112 CYP86A1 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) AT5G23190 199 / 8e-60 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT5G08250 197 / 1e-59 Cytochrome P450 superfamily protein (.1) AT1G69500 191 / 4e-57 CYP704B1 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) AT1G24540 166 / 1e-47 CYP86C1 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) AT1G13150 160 / 4e-45 CYP86C4 "cytochrome P450, family 86, subfamily C, polypeptide 4", cytochrome P450, family 86, subfamily C, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018830 [exp] 548 / 0 AT2G45970 465 / 8e-164 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) Lus10032278 [exp] 422 / 8e-146 AT1G63710 792 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Lus10018217 [exp] 336 / 4e-113 AT5G58860 802 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10040687 [exp] 333 / 5e-112 AT5G58860 803 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10040986 [exp] 197 / 6e-59 AT5G23190 751 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10017394 [exp] 197 / 7e-59 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10010193 [exp] 195 / 3e-58 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10036772 [exp] 192 / 3e-57 AT1G69500 863 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Lus10037157 [exp] 191 / 6e-57 AT1G69500 868 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G085800 [exp] 483 / 4e-170 AT2G45970 866 / 0.0 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) Potri.003G129100 [exp] 421 / 5e-146 AT1G63710 823 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Potri.009G043700 [exp] 334 / 2e-112 AT5G58860 827 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.001G249700 [exp] 316 / 3e-105 AT5G58860 790 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.007G072100 [exp] 203 / 2e-61 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.005G092200 [exp] 196 / 1e-58 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.008G088900 [exp] 191 / 8e-57 AT1G69500 868 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Potri.002G042200 [exp] 169 / 1e-48 AT5G63450 442 / 3e-151 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Potri.002G042100 [exp] 166 / 2e-47 AT3G48520 451 / 1e-154 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.016G031800 [exp] 162 / 2e-47 AT3G56630 402 / 1e-138 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10017789 pacid=23177718 polypeptide=Lus10017789 locus=Lus10017789.g ID=Lus10017789.BGIv1.0 annot-version=v1.0 ATGGACATCTCAACTGCATTCCTCCTGCTCTCCGCGGTCACCGCTTACCTCCTCTGGTTCACCTTCATCTCCCGTTCCTGGCGTGGCCCACGTGTCTGGC CACTCCTCGGCTCCCTTCCTGGGCTCATTGAGAACTGCGACCACCTCCACGACTGGATCTCCGACAACCTTCGAGCTTGCGGCGGCACTTACCAGACCTG CATCTGCGCCGTCCCTTTTCTAGCCAAAAGGCAAGGCCTCGTCACCGTCACCTGCGACCCCAAAAACATCGAGCACATTCTCAAGACTCGCTTCGACAAC TACCCCAAGGGCCCCACTTGGCAAGCCGTCTTCCACGAGCTCCTCGGCGAAGGCATCTTCAACTCCGACGGAGACACCTGGCGCTTCCAGCGTAAGACCG CCGCACTCGAGTTCACCACTAGGACTTTACGCCAAGCCATGGCTCGTTGGGTCAGCCGCGCCATTCAGCTCAGATTCTGCCCTATTCTCCAATCGGCTCA GCTTGACTCCGAGCCGGTTGACCTTCAGGACTTGCTTCTTCGGCTCACTTTCGACAACATCTGCGGCTTGGCTTTCGGGAAAGATCCGGAGACTTGCTCC CCGGGCCTCCCCGAGAACAGCTTTGCATCGGCTTTCGATCGAGCCACTGAAGCTTCTCTCCAGCGCTTCATTCTACCTGAAGTGATCTGGAAGGTGAAAA AATGGCTTGGGCTCGGAATGGAAGTCAGCTTGAGCCGAAGCATTACTCAGCTTGACGGATACTTAACGGCCGTTTTAAACCCGCGAACAGAGGGGGTGCT GGGGCACGGGAATAATTACGTCACGGAAATAATTACAATCTCCACGACGATCTCCTCTCGAGGTTCATGA
AA sequence Show only first row Show all	>Lus10017789 pacid=23177718 polypeptide=Lus10017789 locus=Lus10017789.g ID=Lus10017789.BGIv1.0 annot-version=v1.0 MDISTAFLLLSAVTAYLLWFTFISRSWRGPRVWPLLGSLPGLIENCDHLHDWISDNLRACGGTYQTCICAVPFLAKRQGLVTVTCDPKNIEHILKTRFDN YPKGPTWQAVFHELLGEGIFNSDGDTWRFQRKTAALEFTTRTLRQAMARWVSRAIQLRFCPILQSAQLDSEPVDLQDLLLRLTFDNICGLAFGKDPETCS PGLPENSFASAFDRATEASLQRFILPEVIWKVKKWLGLGMEVSLSRSITQLDGYLTAVLNPRTEGVLGHGNNYVTEIITISTTISSRGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Lus10017789 [exp]	0	1
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10040873 [exp]	2.0	0.9330
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10022196 [exp]	3.0	0.9284
					Lus10017791 [exp]	3.2	0.9085
AT2G20875		EPF1	epidermal patterning factor 1 ...		Lus10018576 [exp]	3.5	0.9038
					Lus10010299 [exp]	3.5	0.8761
AT1G32780			GroES-like zinc-binding dehydr...		Lus10033241 [exp]	3.7	0.9296
AT3G28910	MYB	AtMYB30, MYB30	myb domain protein 30 (.1)		Lus10015369 [exp]	4.0	0.9165
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10039366 [exp]	9.1	0.8352
AT1G44224			ECA1 gametogenesis related fam...		Lus10039882 [exp]	10.9	0.8601
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Lus10018830 [exp]	11.5	0.9026

Compare expression of checked genes

Lus10017789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.