Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46000 79 / 3e-19 unknown protein AT4G00360 77 / 2e-17 ATT1, CYP86A2 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) AT1G01600 72 / 9e-16 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1) AT2G45970 70 / 6e-15 CYP86A8, LCR LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) AT5G58860 67 / 9e-14 CYP86A1 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) AT4G39480 59 / 5e-11 CYP96A9 "cytochrome P450, family 96, subfamily A, polypeptide 9", cytochrome P450, family 96, subfamily A, polypeptide 9 (.1) AT5G23190 56 / 7e-10 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT4G39490 55 / 1e-09 CYP96A10 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) AT1G65340 55 / 2e-09 CYP96A3 "cytochrome P450, family 96, subfamily A, polypeptide 3", cytochrome P450, family 96, subfamily A, polypeptide 3 (.1) AT1G47620 54 / 2e-09 CYP96A8 "cytochrome P450, family 96, subfamily A, polypeptide 8", cytochrome P450, family 96, subfamily A, polypeptide 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018829 [exp] 145 / 1e-44 AT2G46000 171 / 2e-53 unknown protein Lus10018831 [exp] 92 / 3e-23 AT4G00360 403 / 8e-139 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) Lus10014768 [exp] 73 / 1e-15 AT4G00360 756 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) Lus10024644 [exp] 70 / 6e-15 AT1G63710 562 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Lus10032278 [exp] 69 / 3e-14 AT1G63710 792 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Lus10040687 [exp] 59 / 4e-11 AT5G58860 803 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10018217 [exp] 59 / 4e-11 AT5G58860 802 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10040986 [exp] 58 / 1e-10 AT5G23190 751 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10015306 [exp] 57 / 2e-10 AT4G39490 342 / 3e-108 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G086200 [exp] 92 / 5e-24 AT2G46000 176 / 1e-55 unknown protein Potri.014G085800 [exp] 83 / 2e-19 AT2G45970 866 / 0.0 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) Potri.009G043700 [exp] 67 / 5e-14 AT5G58860 827 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.003G129100 [exp] 67 / 9e-14 AT1G63710 823 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Potri.001G249700 [exp] 65 / 4e-13 AT5G58860 790 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.007G080300 [exp] 57 / 2e-10 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G086900 [exp] 55 / 1e-09 AT2G23180 455 / 2e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Potri.001G397900 [exp] 54 / 3e-09 AT4G39490 480 / 6e-166 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.015G132800 [exp] 54 / 3e-09 AT4G39490 589 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.007G072100 [exp] 53 / 5e-09 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017790 pacid=23177724 polypeptide=Lus10017790 locus=Lus10017790.g ID=Lus10017790.BGIv1.0 annot-version=v1.0 ATGAGGTCGACTTGGGGGGACGACTGCATGGAGTTCCGGCCGGAGCGGTGGCTATCTCCCGACGGGAGGAAGTTCGTGGCGCACGATTCGTACAAGTTCG TGGCGTTCAATGCCGGGGAAGTGAATCTTATGGGGATCGATCGGGGCACCATCATGTTTAACATGGTTGATGGCCGCCGATCGCTTGAGCTGAAGGAATT CGTGTTGAACCAGCCGGAGGCATACGAGATCAAGATTGGGGATAACTTGTTCCGTCGAAAAGGAGATCCGCCATTAGAGAATGTGATTGAAGAACTCCAA AGGGCTAAGCACGAAGATTCACTGGCGGAGAAGGAGGATGAGGAGGGGACACAGAAAGAAGAGGAGGAGGAGGAGGAGGATGCTAAAGAAGAACTCTAG
AA sequence Show only first row Show all	>Lus10017790 pacid=23177724 polypeptide=Lus10017790 locus=Lus10017790.g ID=Lus10017790.BGIv1.0 annot-version=v1.0 MRSTWGDDCMEFRPERWLSPDGRKFVAHDSYKFVAFNAGEVNLMGIDRGTIMFNMVDGRRSLELKEFVLNQPEAYEIKIGDNLFRRKGDPPLENVIEELQ RAKHEDSLAEKEDEEGTQKEEEEEEEDAKEEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46000			unknown protein		Lus10017790 [exp]	0	1
AT5G14240			Thioredoxin superfamily protei...		Lus10032064 [exp]	5.3	0.7904
AT5G35080			unknown protein		Lus10008819 [exp]	5.9	0.7928
AT1G15370			SNARE-like superfamily protein...		Lus10002911 [exp]	7.1	0.7818
AT1G07960		ATPDIL5-1	PDI-like 5-1 (.1.2.3)		Lus10011641 [exp]	13.8	0.7553
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10030294 [exp]	17.3	0.7352
AT3G20920			translocation protein-related ...		Lus10009945 [exp]	22.9	0.7706
AT5G54750			Transport protein particle (TR...		Lus10028720 [exp]	23.8	0.7260
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10024417 [exp]	26.5	0.7325
AT4G20960			Cytidine/deoxycytidylate deami...		Lus10037850 [exp]	31.5	0.6735
AT4G12590			Protein of unknown function DU...		Lus10039028 [exp]	38.2	0.7187

Compare expression of checked genes

Lus10017790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.