Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009395 [exp] 120 / 2e-33 ND / Lus10020547 [exp] 107 / 2e-28 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017792 pacid=23177690 polypeptide=Lus10017792 locus=Lus10017792.g ID=Lus10017792.BGIv1.0 annot-version=v1.0 ATGGTATGGGGTGGGGTGGTTGATAAATATGGAGAGGAAGACTCGATAAGATCCGCGAAGGAGGAGGAGGATACAAATCTGGAGAGCTGCAGAGTTATTG GAATTGGAACTGACCGGCGATTGAGTATCGTAATCGAAGCGGAGAAGCTAGCCGCCTCTGTTAGCGATGATGACTCTCCGCCGTCGGGTTTCGAAAAGGG GAAGATCGAGGAGGACGAATCGGAGGATTCGGGCTCGCAATCACCGTCGCTTAGGTTTGGCGGAGGTTCTGGGAAGAAGAGGATGAGAAAGAGGAATAAG TGTTGGGTGGTGGTGGATTTGTATAGGGAGACGGAGAGGACTAGTGCAACGGAGGTGGTGGAGGGGAAAAGAGACTCGTCGGCGGTTTTGGATTCGCCGA CACCACGCCATAGTTCGCCTCGGCTGACTGGTGGAAGAATGGCGGAGGAGCTGTCTACGGCGGCCGTCGTTGGCTGGAAAGGGAAAGCAATGTAA
AA sequence Show only first row Show all	>Lus10017792 pacid=23177690 polypeptide=Lus10017792 locus=Lus10017792.g ID=Lus10017792.BGIv1.0 annot-version=v1.0 MVWGGVVDKYGEEDSIRSAKEEEDTNLESCRVIGIGTDRRLSIVIEAEKLAASVSDDDSPPSGFEKGKIEEDESEDSGSQSPSLRFGGGSGKKRMRKRNK CWVVVDLYRETERTSATEVVEGKRDSSAVLDSPTPRHSSPRLTGGRMAEELSTAAVVGWKGKAM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10017792 [exp]	0	1
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10019967 [exp]	5.7	0.8498
AT3G02720			Class I glutamine amidotransfe...		Lus10010964 [exp]	6.7	0.8655
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10041651 [exp]	7.9	0.9013
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10009985 [exp]	8.8	0.8864
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030605 [exp]	12.0	0.8669
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10009396 [exp]	20.4	0.8832
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10038044 [exp]	21.2	0.8790
AT1G79340		AtMCP2d, ATMC4	metacaspase 2d, metacaspase 4 ...		Lus10001835 [exp]	21.3	0.8188
AT2G41905			unknown protein		Lus10040498 [exp]	22.4	0.8701
AT1G61740			Sulfite exporter TauE/SafE fam...		Lus10020068 [exp]	25.4	0.8615

Compare expression of checked genes

Lus10017792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.