Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66420 67 / 7e-13 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G01260 66 / 2e-12 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G25210 62 / 4e-11 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT2G01370 60 / 1e-10 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G61730 61 / 2e-10 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00390 57 / 3e-09 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00250 55 / 1e-08 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G11510 53 / 5e-08 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G44810 52 / 6e-08 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT5G28040 51 / 3e-07 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002794 [exp] 186 / 1e-58 AT4G01260 96 / 4e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10005506 [exp] 185 / 4e-57 AT4G00390 108 / 9e-27 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10004772 [exp] 182 / 2e-55 AT4G01260 95 / 1e-21 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10028550 [exp] 119 / 2e-31 AT4G00390 122 / 1e-31 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10018859 [exp] 112 / 9e-30 AT4G00390 115 / 9e-30 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10018846 [exp] 74 / 1e-15 ND / Lus10019007 [exp] 65 / 6e-12 AT5G28040 256 / 1e-81 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10000940 [exp] 61 / 1e-10 AT5G28040 272 / 2e-87 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10015944 [exp] 59 / 1e-09 AT5G28040 264 / 2e-84 DNA-binding storekeeper protein-related transcriptional regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G293900 [exp] 107 / 4e-27 AT4G25210 142 / 9e-39 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G088400 [exp] 106 / 1e-26 AT4G25210 133 / 2e-35 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.007G119800 [exp] 72 / 2e-14 AT1G61730 101 / 3e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G056400 [exp] 63 / 3e-11 AT5G28040 229 / 3e-71 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.001G261700 [exp] 52 / 8e-08 AT5G28040 239 / 9e-75 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.004G090900 [exp] 49 / 1e-06 AT5G28040 60 / 7e-10 DNA-binding storekeeper protein-related transcriptional regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04504 [flax] [poplar] DUF573 Protein of unknown function, DUF573
Representative CDS sequence Show only first row Show all	>Lus10017793 pacid=23177687 polypeptide=Lus10017793 locus=Lus10017793.g ID=Lus10017793.BGIv1.0 annot-version=v1.0 ATGGAGGCCACTCCATCCAAGTCTTCTACTAAGTCCCCGGTTTCACATGCTGTTTCTGCCTCGAGGAAGAGGGGAACCGAAACCGAGACCGAGGCCAAGG GAACTAAGCGGAAGAAGAAGGAGTCGGCGGCGAAACCTTCAAATTCGGAAAAGAAGCAGCAATTTCCATGGATCTGGGGCGAGAGCGATGAGATTGTCCT GTTAAACGCACTTCTCGAGTTCACCAAGAGAGGAGTCGATCCTTTCAAGGAGATTGGTGATCTGCACGATCCTGTCAAGAAATCTCTCAACATTGACGTC TATGTGTCTCAGCTGACAGAGAAAGCTGCCCGATTGAAGAAGAAGTTCAGGGAGGTCGCCGCTGATAAAAGAAAGAGACCCTCGAACGCACATGAACAGA AGTGCTTCGACTTGTCCAATGAGATCTGGGGCATGCAAGCATCCAGCGGAGATATAGAAACCGGTAATGCTCCCAAATCCAGTAATGCTCGCAGGTCAAA TGGAAAGGAGAAGGGCAGCAGCAGGGATGGCGGAAATGGCAATGCAGTTACGATTGAGGGAGATGCAGAAATAAAGGATATTGTGATTAACAAGGGATTG GACATGGTGGAAGGGTCAAAGAGGGCAGAGTTTGAGAAAAGAGGGAAGGATGTGTACTTTGCAAAATTGAAGGTGTTTATAAAACAGACTGAGTTGGTGC TTATGATGATTAGGAGGAGCTAG
AA sequence Show only first row Show all	>Lus10017793 pacid=23177687 polypeptide=Lus10017793 locus=Lus10017793.g ID=Lus10017793.BGIv1.0 annot-version=v1.0 MEATPSKSSTKSPVSHAVSASRKRGTETETEAKGTKRKKKESAAKPSNSEKKQQFPWIWGESDEIVLLNALLEFTKRGVDPFKEIGDLHDPVKKSLNIDV YVSQLTEKAARLKKKFREVAADKRKRPSNAHEQKCFDLSNEIWGMQASSGDIETGNAPKSSNARRSNGKEKGSSRDGGNGNAVTIEGDAEIKDIVINKGL DMVEGSKRAEFEKRGKDVYFAKLKVFIKQTELVLMMIRRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66420	GeBP		DNA-binding storekeeper protei...		Lus10017793 [exp]	0	1
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Lus10000539 [exp]	2.6	0.9356
					Lus10043392 [exp]	5.8	0.9074
AT3G11760			unknown protein		Lus10013598 [exp]	7.4	0.8655
AT2G23810		TET8	tetraspanin8 (.1)		Lus10019965 [exp]	10.2	0.8962
AT5G11960			Protein of unknown function (D...		Lus10013530 [exp]	10.5	0.8040
AT2G17140			Pentatricopeptide repeat (PPR)...		Lus10013832 [exp]	12.4	0.8683
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10015587 [exp]	13.6	0.8763
AT4G32030			unknown protein		Lus10001935 [exp]	16.4	0.8657
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10023099 [exp]	17.2	0.8747
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10027337 [exp]	17.5	0.8556

Compare expression of checked genes

Lus10017793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.