Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01610 369 / 7e-124 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT4G00400 368 / 1e-123 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT2G38110 307 / 8e-100 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT3G11430 265 / 2e-83 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1) AT5G06090 251 / 5e-78 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT1G06520 244 / 1e-74 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT3G11325 229 / 4e-71 Phospholipid/glycerol acyltransferase family protein (.1) AT1G02390 221 / 1e-66 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1) AT4G01950 217 / 7e-65 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018832 [exp] 821 / 0 AT3G11430 390 / 3e-132 glycerol-3-phosphate acyltransferase 5 (.1) Lus10010741 [exp] 424 / 4e-145 AT2G38110 555 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10002500 [exp] 371 / 9e-125 AT2G38110 683 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10004833 [exp] 295 / 9e-96 AT2G38110 512 / 3e-180 glycerol-3-phosphate acyltransferase 6 (.1) Lus10007344 [exp] 290 / 9e-94 AT1G06520 251 / 2e-77 glycerol-3-phosphate acyltransferase 1 (.1) Lus10036684 [exp] 276 / 1e-87 AT2G38110 558 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10004711 [exp] 260 / 1e-81 AT3G11430 743 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Lus10020767 [exp] 250 / 1e-77 AT1G06520 569 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10002501 [exp] 241 / 1e-75 AT2G38110 330 / 2e-109 glycerol-3-phosphate acyltransferase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G063900 [exp] 421 / 3e-144 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G198100 [exp] 420 / 8e-144 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.014G085500 [exp] 395 / 5e-134 AT4G00400 757 / 0.0 glycerol-3-phosphate acyltransferase 8 (.1) Potri.006G097800 [exp] 301 / 1e-97 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G113100 [exp] 296 / 1e-95 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.010G201200 [exp] 258 / 8e-81 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Potri.008G058200 [exp] 256 / 3e-80 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1) Potri.005G202200 [exp] 254 / 9e-79 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.002G192600 [exp] 242 / 3e-74 AT4G01950 601 / 0.0 glycerol-3-phosphate acyltransferase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10017794 pacid=23177692 polypeptide=Lus10017794 locus=Lus10017794.g ID=Lus10017794.BGIv1.0 annot-version=v1.0 ATGCAGTCGTCGCCGGAACTGAAGAAGCGGAGTTTTCCTTCGATCAAGTCATGTACGGGAACTTCGTACGATTCAATAGCCGCGGATCTTGATGGAACGC TTCTATGCTCTAGCAGCTCCTTCCCTTACTTCATGCTGGTAGCAGTGGAGGCAGGCAGCCTCCTCCGTGGCTTCGTGTTGCTCCTCTCCCTCCCAGCCAT CATTATCTCCTACTTTTTCATCTCCGAAGCCTTCGGAATCCAGATTCTCATCTTCATCTCCTTCGCCGGCCTCAAGATCCGCGACATCGAACTTGCTTCC CGTGCCGTCTTGCCTCGGTTTTACGCGGCGGATGTGAGGGCGGACAGCTACGAGGTGTTCGACCGATGCAAGAAGAGGAAGGTAGTAGTAACGGCGAATC CGACGCTAATGGTGGAGCCGTTCGTGAAGGATTTCCTGGGCGGTGATAAAGTGCTGGGGACGGAGATTGAAGTGAATCCCAAGACAAAGAGAGCCACCGG ATTTGTGAAAAAGCCAGGCGTCTTGGTTGGAAAGTGGAAGAAGATAGCAATCATGAAGGAATTCGGGGAAGAAGTGCCGGATCTTGGCATCGGCGACCGG ACAACCGATCACGATTTCATGTCCATTTGCAAGCGCATCGTCCGCTACACCTACGAGCTCCTCGGCATCCACTTAGTCATTAAAGGAACCCGACCGCCCC CTGCCGCCGCCGGCACCGCAGGTGGCAACCTCTACGTCTGTAACCACCGCACCGCCCTGGACCCCATCATCATCGCCATAGCGCTTGGTCGCAAAGTCTC CTGCGTCACTTACAGCGTTAGTCGCCTCTCGAGGCTCCTCTCCCCTATCCCTGCTGTCGCCTTGACTAGAGACAGAGAAGGTGACGCCGCCATGATCAAG TCCCTCCTTGAAAAGGGGGATTTGGTGGTCTGCCCCGAGGGGACTACTTGCAGGGAGCCATTCTTGCTGAGATTCAGCGCTCTGTTTGCTGAGCTGAGCG ATCGGATTGTCCCTGTGGCGATGGATTGTAAGCAGGGGATGTTTTACGGGACGACGGTGAGAGGGGTGAAGTTTTGGGATCCTTACTTCTTTTTCATGAA CCCGAGGCCGACTTATGAGGTGACGTTTTTGGATCGGATTCCGGAGGAGATGACGGTGAAGGCTGGAGGGAAGTCGTCGATAGAGGTGGCGAATTATGTG CAGAGGATGTTGGGTGATGTGCTTGGGTTCGAGTGTACTGGGCTGACAAGGAAGGATAAGTATATGCTGCTTGGTGGGAATGACGGTAAAGTTGAGTCCA TTTTGAATGCCAAGAAGCAGTAG
AA sequence Show only first row Show all	>Lus10017794 pacid=23177692 polypeptide=Lus10017794 locus=Lus10017794.g ID=Lus10017794.BGIv1.0 annot-version=v1.0 MQSSPELKKRSFPSIKSCTGTSYDSIAADLDGTLLCSSSSFPYFMLVAVEAGSLLRGFVLLLSLPAIIISYFFISEAFGIQILIFISFAGLKIRDIELAS RAVLPRFYAADVRADSYEVFDRCKKRKVVVTANPTLMVEPFVKDFLGGDKVLGTEIEVNPKTKRATGFVKKPGVLVGKWKKIAIMKEFGEEVPDLGIGDR TTDHDFMSICKRIVRYTYELLGIHLVIKGTRPPPAAAGTAGGNLYVCNHRTALDPIIIAIALGRKVSCVTYSVSRLSRLLSPIPAVALTRDREGDAAMIK SLLEKGDLVVCPEGTTCREPFLLRFSALFAELSDRIVPVAMDCKQGMFYGTTVRGVKFWDPYFFFMNPRPTYEVTFLDRIPEEMTVKAGGKSSIEVANYV QRMLGDVLGFECTGLTRKDKYMLLGGNDGKVESILNAKKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10017794 [exp]	0	1
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Lus10027554 [exp]	1.4	0.8341
AT5G10480		PEP, PAS2	PEPINO, PASTICCINO 2, Protein-...		Lus10025335 [exp]	2.0	0.8550
AT1G67400			ELMO/CED-12 family protein (.1...		Lus10037017 [exp]	5.7	0.8231
AT4G23740			Leucine-rich repeat protein ki...		Lus10014943 [exp]	6.6	0.7882
AT1G24530			Transducin/WD40 repeat-like su...		Lus10011402 [exp]	9.2	0.8068
AT1G04280			P-loop containing nucleoside t...		Lus10022217 [exp]	10.2	0.7563
AT5G43745			Protein of unknown function (D...		Lus10039407 [exp]	17.7	0.8283
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10023154 [exp]	19.2	0.8121
AT5G52280			Myosin heavy chain-related pro...		Lus10029303 [exp]	20.0	0.7624
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012181 [exp]	20.1	0.7177

Compare expression of checked genes

Lus10017794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.