Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61415 381 / 3e-132 ASK21 SKP1-like 21 (.1.2) AT2G45950 361 / 2e-124 ASK20 SKP1-like 20 (.1.2) AT3G21850 89 / 4e-21 ASK9 SKP1-like 9 (.1) AT4G34210 78 / 3e-17 ASK11 SKP1-like 11 (.1) AT1G75950 77 / 1e-16 UIP1, SKP1A, ATSKP1, ASK1, SKP1 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) AT5G42190 76 / 3e-16 SKP1B, ASK2 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) AT2G03170 75 / 3e-16 ASK14 SKP1-like 14 (.1) AT2G25700 75 / 7e-16 ASK3 SKP1-like 3 (.1) AT4G34470 74 / 7e-16 ASK12 SKP1-like 12 (.1) AT1G20140 74 / 9e-16 ASK4 SKP1-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018833 [exp] 580 / 0 AT3G61415 457 / 1e-153 SKP1-like 21 (.1.2) Lus10014770 [exp] 483 / 5e-172 AT3G61415 468 / 2e-166 SKP1-like 21 (.1.2) Lus10036365 [exp] 333 / 1e-113 AT3G61415 424 / 1e-149 SKP1-like 21 (.1.2) Lus10019794 [exp] 81 / 5e-18 AT1G75950 241 / 8e-83 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Lus10013575 [exp] 79 / 1e-17 AT1G75950 255 / 2e-88 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Lus10017281 [exp] 79 / 2e-17 AT5G42190 259 / 4e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10005610 [exp] 79 / 2e-17 AT5G42190 261 / 2e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10017282 [exp] 79 / 3e-17 AT5G42190 259 / 6e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10014115 [exp] 78 / 2e-15 AT1G68010 700 / 0.0 hydroxypyruvate reductase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G160600 [exp] 436 / 1e-153 AT3G61415 426 / 5e-150 SKP1-like 21 (.1.2) Potri.014G085400 [exp] 434 / 1e-152 AT3G61415 406 / 5e-142 SKP1-like 21 (.1.2) Potri.012G143500 [exp] 399 / 4e-139 AT3G61415 394 / 4e-137 SKP1-like 21 (.1.2) Potri.015G146500 [exp] 387 / 9e-135 AT2G45950 350 / 3e-120 SKP1-like 20 (.1.2) Potri.002G018700 [exp] 82 / 1e-18 AT5G42190 249 / 6e-86 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.009G135800 [exp] 81 / 3e-18 AT1G20140 215 / 9e-73 SKP1-like 4 (.1) Potri.004G175900 [exp] 78 / 3e-17 AT5G42190 245 / 2e-84 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.005G109900 [exp] 77 / 6e-17 AT5G42190 249 / 5e-86 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.005G243100 [exp] 75 / 5e-16 AT1G75950 244 / 2e-84 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Potri.012G086900 [exp] 52 / 5e-08 AT4G34210 130 / 1e-39 SKP1-like 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF03931 [flax] [poplar] Skp1_POZ Skp1 family, tetramerisation domain CL0033 [flax] [poplar] PF01466 [flax] [poplar] Skp1 Skp1 family, dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10017795 pacid=23177707 polypeptide=Lus10017795 locus=Lus10017795.g ID=Lus10017795.BGIv1.0 annot-version=v1.0 ATGATGAAGTCATATATCTGGCTCCAGACTGCTGATGGTGCGATTCAGCAAGTCGAACAAGAGGCTGCCATGTATTGTCCTATGATATGTCACGAAATAA TACAGAAGGGCATGGGATCTTCCAAGAACTATGCTATTACTCTTCCTCAACGCGTCAGCCCAGCCATGTTGAGCCAAATTCTTGATTACTGCAGGTTTCA TCAAGTACCAGGCCGGTCTAATAAGGAACGTAAAAGTTATGATGAGAGGTTCATTCGGATGGATACAAAAAGGCTTTGTGAGTTGACATCAGCTGCTGAT AGCCTCCAGCTTAAACCTTTGGTTGATCTCACTAGTCGTGCATTGGCACGGATTATAGAGGGAAAAACACCAGAGGAGATACGTGAGATATTCCATTTGC CAGATGATCTTACAGAGGAAGAGAAGTTGGAGCCTTTAAAAAACACAACTGATGATCCACGGATACGACTTCTGAATCGGTTGTATGCAAAGAAGAGGAA AGAACTGAAAGAGAGGGAAAAACAAAAGAATATTGAGGCTGAAGAAGAGCGTGTAGATGAGCGATCAGTTGATGACTTGCTGTCGTTTATTAATGGAGAA AATGCAGATTCTAAAGGGGTTAAGACTTCCAAAAATAAAAAGAAAAATCGTAGGAGAAAGGATCAGCAGAAGAGCACTCACGTAACTTCCGAATCACACC AAAAGGACTCGAGTAGCTTTGGTTGTTCAGGCCACACTGACGTGGATGATAATGAAACAAATTCTGCTCACAGTGAGACATCAAGGTTACAAGATGAAGA AGTTGAAGTTCTTGCTCGTAAGGTGGATCTTGATGATGTCGATCTTGATGATGAGATTGATCCAGCATTAAAGGAAAAAATTGATAGGGAAGTGGAAGAT TTCGCTCGGAGATTGAACTCAGACTGGCCTGAGAGGATGCAAGAGCTTCTATCTTTGGGTCAAGAAAGTAATCCAACTCACCTTTCCAGCAATGGCAATG GTAGCATGAGAAATGACAGAGGTGTGTATTTGGGTGGAGATAGGGCACACAGATGA
AA sequence Show only first row Show all	>Lus10017795 pacid=23177707 polypeptide=Lus10017795 locus=Lus10017795.g ID=Lus10017795.BGIv1.0 annot-version=v1.0 MMKSYIWLQTADGAIQQVEQEAAMYCPMICHEIIQKGMGSSKNYAITLPQRVSPAMLSQILDYCRFHQVPGRSNKERKSYDERFIRMDTKRLCELTSAAD SLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKEREKQKNIEAEEERVDERSVDDLLSFINGE NADSKGVKTSKNKKKNRRRKDQQKSTHVTSESHQKDSSSFGCSGHTDVDDNETNSAHSETSRLQDEEVEVLARKVDLDDVDLDDEIDPALKEKIDREVED FARRLNSDWPERMQELLSLGQESNPTHLSSNGNGSMRNDRGVYLGGDRAHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Lus10017795 [exp]	0	1
AT2G25870			haloacid dehalogenase-like hyd...		Lus10006031 [exp]	1.4	0.8810
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10040883 [exp]	15.5	0.8555
AT1G67590			Remorin family protein (.1.2)		Lus10015817 [exp]	18.0	0.8291
AT5G05730		JDL1, WEI2, TRP...	WEAK ETHYLENE INSENSITIVE 2, T...		Lus10014842 [exp]	19.1	0.8438
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10033203 [exp]	20.2	0.8607
AT5G09995			unknown protein		Lus10016816 [exp]	20.4	0.8476
AT5G26910			unknown protein		Lus10020689 [exp]	21.4	0.8103
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Lus10022043 [exp]	22.5	0.8560
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Lus10030829 [exp]	24.5	0.8081
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10014390 [exp]	29.2	0.8211

Compare expression of checked genes

Lus10017795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.