Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01650 795 / 0 ATSPPL4 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) AT1G63690 773 / 0 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) AT2G43070 449 / 1e-152 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) AT1G05820 401 / 5e-134 ATSPPL5 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) AT4G33410 98 / 8e-22 ATSPPL1 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) AT2G03120 95 / 5e-21 ATSPP signal peptide peptidase (.1) AT2G30290 45 / 0.0001 VSR2, VSR1;2, BP80-1;2, AtVSR2 VACUOLAR SORTING RECEPTOR 1;2, binding protein of 80 kDa 1;2, VACUOLAR SORTING RECEPTOR 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031104 [exp] 796 / 0 AT1G63690 872 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10014769 [exp] 728 / 0 AT4G00370 662 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10036364 [exp] 724 / 0 AT1G01650 608 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10024653 [exp] 710 / 0 AT1G63690 744 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10032285 [exp] 708 / 0 AT1G63690 713 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10018834 [exp] 631 / 0 AT1G01650 685 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10001154 [exp] 438 / 2e-148 AT1G05820 563 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) Lus10035484 [exp] 340 / 4e-112 AT1G63690 364 / 3e-122 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10019557 [exp] 176 / 1e-50 AT2G43070 245 / 2e-77 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G160500 [exp] 852 / 0 AT1G01650 838 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.014G085300 [exp] 843 / 0 AT1G01650 810 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.003G128500 [exp] 814 / 0 AT1G63690 857 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.001G103100 [exp] 795 / 0 AT1G63690 829 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.002G232200 [exp] 441 / 2e-149 AT2G43070 626 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.014G150000 [exp] 431 / 2e-145 AT2G43070 570 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.012G142400 [exp] 102 / 2e-23 AT4G33410 633 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Potri.015G145600 [exp] 95 / 7e-21 AT4G33410 614 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Potri.001G276700 [exp] 92 / 3e-20 AT2G03120 550 / 0.0 signal peptide peptidase (.1) Potri.009G071600 [exp] 92 / 6e-20 AT2G03120 542 / 0.0 signal peptide peptidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0130 [flax] [poplar] Peptidase_AD PF04258 [flax] [poplar] Peptidase_A22B Signal peptide peptidase CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10017796 pacid=23177729 polypeptide=Lus10017796 locus=Lus10017796.g ID=Lus10017796.BGIv1.0 annot-version=v1.0 ATGGGAAAGTTGGAATCTTTCTGGGTGTTGTTTGTGGCCTTCTTGGCTTTAAGTCCAAGTTTTTGTTCCGCTGGAGACATAGTACATCCAGACGATAAGG CTCCCAGCAAGCCTGGATGCGACAATAACTTTGTTCTGGTAAAAATTCCTACTTGGGTTGATGGGGTGGAAGACACGGAGTATGTTGGTGTTGGTGCTCG ATTTGGGCCAACACTAGAATCAAAAGAACAACATGCCAATAAGTCTAGGCTTGCTTTGGCTGACCCTCCTGATTGTTGCAGCACACCCAAGAATAAGCTT ACAGGGGAGGTAATTGTGGTGCACCGTGGAAACTGCAGCTTCACAACTAAGTCAAATATTGCTGAGGCCGCTGGTGCTTCAGCCATTCTGATTATAAACA ATCGAACGGAGCTTTATATGATGGTTTGTGAAGATGATGAAACTGATCTGGATATAGGAATTCCAGCTGTCATGCTTCCGCAGGATGCTGGAACAACCTT GGAAAACTATATGAACAACAACTCAACAGGTTTCATTTACTTCATGGCCATGCAAGCAGCAACCAAACTGAAATGTGCTTTCCATGCAAAATCTTTGTTC ACGTCCAGTAATCATATGGTGTTTTGTGTTATGTTTTGCTCAGTTCTTCTGCAGCTTTATTCTCCACGCCGACCATTAGTGGATGTTGCAGAAGTTTTTT TGTGGCTTATGGCTGTTGTCACCATCTTATGTGCTTCTTATTGGTCTGCCTGGAGTGCAAAAGAGGCAGCGATAGAGCATGAAAAGCTTCTAAAGGATGG ACTAGACGTATGCCAGGAACGTATTTGTGCTAGTAGCATAGTTAACATCAACGTCACCTCTGCAGTTCTGTTTGTTGTGGTGGCTTCATGTTTCTTAGTT ATGCTATACAAACTCATGTCATTCTGGTTTATTGAGGTTTTGGTAGTTCTCTTCTGCATAGGTGGTGTTGAGGGCTTGCAGACTTGTCTGGTTGCTTTGT TATCATGTTTCAGATGGTTCCAACATGCTGCTGAATCATCTCTTAAAGTCCCCTTGTATGGAGCTGTCTCGTATTTGACATTAATCGTCTCTCCCTTCTG CATAGCCTTCACTGTAGTTTGGGCAGTATATCGCCGGCTTTCATTTGCTTGGATAGGTCAAGATATCCTTGGCATTGCACTGATCGTTACAGTTCTTCAG ATTGTTCATGTACCGAACCTCAAGATTGGTACAGTTCTTCTCAGTTGTGCCTTCTTATATGACATCTTCTGGGTGTTTGTTTCGAAATACTGGTTCAACG AGAGTGTCATGATTGTGGTAGCTCGCGGTGATAGGAGTGGAGAGGACGGCATTCCAATGCTTCTGAAAATCCCTAGGATGTTCGATCCATGGGGTGGATA TAGTGTTATTGGCTTTGGTGACATCATATTACCAGGCCTGGTCGTTGCTCTGTCGTTAAGATACGACTGGCTGGCGAATAAGACTCTTAAAAATGGATAC TTTGTATGGGCAATGACTGCATATGGCTTAGGTCTCCTAGTGACATATATAGCTCTGAACCTGATGGATGGCCATGGCCAGCCAGCTCTTCTTTACATCG TTCCTTTTACGTTAGGAACATTTCTGACTCTGGGAAAGAAGAGAGGAGATCTAAGGATACTATGGACAAGAGGGGAACCGGAGAGGCCTTGTCCACACCA TCAACTGCACCACTCTCAATCTCAATTACATCAACAATAA
AA sequence Show only first row Show all	>Lus10017796 pacid=23177729 polypeptide=Lus10017796 locus=Lus10017796.g ID=Lus10017796.BGIv1.0 annot-version=v1.0 MGKLESFWVLFVAFLALSPSFCSAGDIVHPDDKAPSKPGCDNNFVLVKIPTWVDGVEDTEYVGVGARFGPTLESKEQHANKSRLALADPPDCCSTPKNKL TGEVIVVHRGNCSFTTKSNIAEAAGASAILIINNRTELYMMVCEDDETDLDIGIPAVMLPQDAGTTLENYMNNNSTGFIYFMAMQAATKLKCAFHAKSLF TSSNHMVFCVMFCSVLLQLYSPRRPLVDVAEVFLWLMAVVTILCASYWSAWSAKEAAIEHEKLLKDGLDVCQERICASSIVNINVTSAVLFVVVASCFLV MLYKLMSFWFIEVLVVLFCIGGVEGLQTCLVALLSCFRWFQHAAESSLKVPLYGAVSYLTLIVSPFCIAFTVVWAVYRRLSFAWIGQDILGIALIVTVLQ IVHVPNLKIGTVLLSCAFLYDIFWVFVSKYWFNESVMIVVARGDRSGEDGIPMLLKIPRMFDPWGGYSVIGFGDIILPGLVVALSLRYDWLANKTLKNGY FVWAMTAYGLGLLVTYIALNLMDGHGQPALLYIVPFTLGTFLTLGKKRGDLRILWTRGEPERPCPHHQLHHSQSQLHQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10017796 [exp]	0	1
AT1G01650		ATSPPL4	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10018834 [exp]	1.0	0.9260
AT1G13310			Endosomal targeting BRO1-like ...		Lus10034281 [exp]	4.6	0.8119
					Lus10030083 [exp]	4.9	0.8377
AT4G32272			Nucleotide/sugar transporter f...		Lus10006645 [exp]	6.2	0.8632
AT2G15560			Putative endonuclease or glyco...		Lus10019845 [exp]	6.5	0.7974
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10005988 [exp]	6.7	0.8191
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Lus10041386 [exp]	12.3	0.8325
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10041792 [exp]	13.6	0.8122
AT3G14460			LRR and NB-ARC domains-contain...		Lus10026132 [exp]	13.9	0.8027
AT5G41980			unknown protein		Lus10018174 [exp]	15.3	0.7482

Compare expression of checked genes

Lus10017796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.