Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05330 99 / 4e-23 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2), HMG-box (high mobility group) DNA-binding family protein (.3) AT2G45900 103 / 1e-22 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT3G61380 94 / 1e-19 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT1G01695 76 / 3e-14 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT4G00440 73 / 5e-13 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) AT5G23420 54 / 1e-07 HMGB6 high-mobility group box 6 (.1.2) AT1G07620 54 / 5e-07 ATOBGM GTP-binding protein Obg/CgtA (.1) AT5G02390 50 / 7e-06 DAU1 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) AT1G63670 48 / 2e-05 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) AT4G35570 40 / 0.001 NFD5, NFD05, HMGD, HMGB5 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5, high mobility group B5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018833 [exp] 919 / 0 AT3G61415 457 / 1e-153 SKP1-like 21 (.1.2) Lus10000418 [exp] 261 / 1e-82 AT5G05330 109 / 1e-29 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2), HMG-box (high mobility group) DNA-binding family protein (.3) Lus10014776 [exp] 208 / 7e-57 AT4G00440 239 / 3e-67 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10036356 [exp] 204 / 2e-55 AT4G00440 241 / 6e-68 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10028147 [exp] 177 / 1e-47 AT2G45900 224 / 4e-65 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10042850 [exp] 181 / 3e-47 AT2G45900 316 / 1e-94 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10016715 [exp] 47 / 8e-05 AT5G02390 211 / 1e-57 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G049100 [exp] 147 / 2e-40 AT5G05330 139 / 3e-41 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2), HMG-box (high mobility group) DNA-binding family protein (.3) Potri.014G084600 [exp] 155 / 5e-39 AT4G00440 395 / 4e-124 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.002G160000 [exp] 146 / 6e-36 AT4G00440 351 / 6e-107 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.016G095500 [exp] 63 / 6e-10 AT5G02390 189 / 9e-50 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.009G030700 [exp] 54 / 3e-07 AT5G02390 99 / 7e-21 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.001G239500 [exp] 53 / 7e-07 AT5G02390 149 / 6e-37 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.007G000900 [exp] 47 / 1e-05 AT5G23420 156 / 8e-48 high-mobility group box 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017797 pacid=23177714 polypeptide=Lus10017797 locus=Lus10017797.g ID=Lus10017797.BGIv1.0 annot-version=v1.0 ATGGCGAACCCGGCCAGAAATCGCAAAAGGGTTTACGCTATTCCTCGGCGCGCTCCTGACGGAAGCTCCTTTCAACCATGCGACAAGTGTGGGGTTTCGG TGGCGATTGCTCTGTCTGACCTACACGAATGCGAAAACAGCGTCTCCAAAAGGGATGTCAAGAGATTCAGAGGTTTTTTCTGTAATCGCAACTTAGTCAT CAGAGAAACCCTCGACGGCCAGCCATTATCGCCGTTCCGATACTTCATGCAAAGTTTTCGAAAGAGTTGTGATTCTGGGAATCCAGTTGATGTTGACAAT GAAGGGTATGCGACTTGGAAGACTATGTCAAAGAAGGAGAGGCAGACTTATATTGATCATGCTCAAAGGGTGAATTCTGCTTACTGCAAACGTTGGACTT ATGAGATTCGTTACCACATGTTCAAGGTGGACGACGAGGCTGATTCACTCGAGTTTGCGATGTTTGATACGGATGGTGAAGAACATATGGTTGATAAGCG TAGACCGAGTGTGAAGGAGCTCATAGAGGAAGATTTGTTGAGTGAGTTATTGTCTAAGAGCGATACAATGAGTGCTGAAGTCGGATTCATATCGGAGAGG AACCGAACAAGGGCAGGAAAGACAAGAACAAGTCACAGGAAAGGACCTCCTGCTCAACTGCCTTGTCCCTACAACTTACAAGTTGTTGATGATCAAAAGC AAAGGGCTTCACTGAGGAACACGTCTGATAAACTAGTCAACGTTGATCTAGAAACTGACCAACACTCAAAGCCACCTGTAGCAGAACAGGAGAACTGTGA GTCAAAGCAAGCCAACAATCATTCAGCAAACAAACAGCACAAATTCTTCAGGAGGAAGTCCAAGTCCTTTGATAAGAACGTTTGCAATGGTAATAAGTTG AAGCCGGGATCTGAAACAAACAAGGGAGGACTGGAAAGAAGCAGTTCCCATTTTTCCTTCACTGAAATTAAAAGGAAGTTTAAAAATGCTATGGGAAGAG AGCAACTACTAGAGGGTGACAGAAGAAGTTTGTCAGGCAAGGAACACTTCCTCGTCGAAACAATTGCATCACAGGCCATGAGTTTCAGGAAAGTAGAGAA TGATGCCACCAGACCCATTGAATGCTGTAACGAGGGGAAGGAGCAATATCAAGTTACTAATCTTTCCAAGCCAAGACAATCTAACATCTACGCTGAAGAT GAGAAACATACTACAGAGATGCTAAGTAATGGTCTTACTACAGGAGTGAAAAAGAATGCAAACCCCCTTTCCAGGATTCTCTCTTTCCCAGACCACAATT GTTCTTCTGTTGGCAGTTCAGGAATCGATCTTTGGTATGGTTTCTTACCAGCACGAATGAGCTTCCCAAACATGGAAAAATTTCAGAGGCTGGAAAGTCA TCTGGGTCGAATATCATTGAGCTCAGAGCTCTCAGATGAAGATCATGAGAAAGCACTGCAGGTTTCTTCAGAGCCAGTTTCAAATGAGCTTATTATTGAT GATGGTGAAGAAATGAATGTAGATGAGGTGACTCCTCAAGGTTGTTCTGAGATTGAATTGTCCGGTCAGATGGTAGCTTCAGAAGAGATCGATATCAGTA CAGGATCCACCAGTAGTTCACAATCTGTTGAATTTGCAGTACAACCCCTGATGATTCAGTTTGAAGAGATTGATTCGAAAAGTCGTACAGAAGACGCAAA ACATTGCATAGTTGAGTTCATAGAGAATGTAGTGGTATCATCTGGTCTAACCTGGGAGGAGTTGTCAGATTCTCCAGTAGACCAGATTCTTGATCCATCA AGTTGTCAAGAGATGGAGTTGTTCCCTAACCAGCTTTGTCAGGACAAGCAACTCCTGTTCGATTGTACCGATGAAGTCCTCGTGGAGCTTTATGATTGCA AATACTTGAGTTGTCACCCTGGATTATCCCGACGCATTCAACCAGTAGCCATGGACAAGGACAATACTGTTCAAGAGGTATGGGAAAGAGTTTATTGGCA CCTCACTCCATTTCCAGAGCCCCATAGTTTGGAACAGATTGTAGAGAGAGACGTCATGGTTAGTAAGAAGAGCAGCAGCTCATGGATGGAGCTTGGACGT GATACTCAGACCGTCCTTGTCGAAATTAGTGAAGCCATTTTTGAAGATGTTGTTGAAGGAATCATACGTAGCTCTGTAAATAGATCTGGAAAAAATGGAG GATATGTAGATAGAAGATATTGCTTGTACTAG
AA sequence Show only first row Show all	>Lus10017797 pacid=23177714 polypeptide=Lus10017797 locus=Lus10017797.g ID=Lus10017797.BGIv1.0 annot-version=v1.0 MANPARNRKRVYAIPRRAPDGSSFQPCDKCGVSVAIALSDLHECENSVSKRDVKRFRGFFCNRNLVIRETLDGQPLSPFRYFMQSFRKSCDSGNPVDVDN EGYATWKTMSKKERQTYIDHAQRVNSAYCKRWTYEIRYHMFKVDDEADSLEFAMFDTDGEEHMVDKRRPSVKELIEEDLLSELLSKSDTMSAEVGFISER NRTRAGKTRTSHRKGPPAQLPCPYNLQVVDDQKQRASLRNTSDKLVNVDLETDQHSKPPVAEQENCESKQANNHSANKQHKFFRRKSKSFDKNVCNGNKL KPGSETNKGGLERSSSHFSFTEIKRKFKNAMGREQLLEGDRRSLSGKEHFLVETIASQAMSFRKVENDATRPIECCNEGKEQYQVTNLSKPRQSNIYAED EKHTTEMLSNGLTTGVKKNANPLSRILSFPDHNCSSVGSSGIDLWYGFLPARMSFPNMEKFQRLESHLGRISLSSELSDEDHEKALQVSSEPVSNELIID DGEEMNVDEVTPQGCSEIELSGQMVASEEIDISTGSTSSSQSVEFAVQPLMIQFEEIDSKSRTEDAKHCIVEFIENVVVSSGLTWEELSDSPVDQILDPS SCQEMELFPNQLCQDKQLLFDCTDEVLVELYDCKYLSCHPGLSRRIQPVAMDKDNTVQEVWERVYWHLTPFPEPHSLEQIVERDVMVSKKSSSSWMELGR DTQTVLVEISEAIFEDVVEGIIRSSVNRSGKNGGYVDRRYCLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00440			Protein of unknown function (D...		Lus10017797 [exp]	0	1
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Lus10031562 [exp]	10.1	0.8312
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10009412 [exp]	18.7	0.8094
AT3G47630			unknown protein		Lus10023590 [exp]	23.8	0.8025
AT2G31970		ATRAD50, RAD50	DNA repair-recombination prote...		Lus10016644 [exp]	25.0	0.7975
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10016410 [exp]	34.5	0.7881
AT4G35900	bZIP	ATBZIP14, FD-1,...	Basic-leucine zipper (bZIP) tr...		Lus10017283 [exp]	38.4	0.8235
AT4G23660		ATPPT1	polyprenyltransferase 1 (.1.2....		Lus10033224 [exp]	41.1	0.8057
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10009225 [exp]	41.7	0.8121
AT2G30990			Protein of unknown function (D...		Lus10017644 [exp]	43.3	0.8078
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10038139 [exp]	43.7	0.7922

Compare expression of checked genes

Lus10017797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.