Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49060 169 / 4e-46 U-box domain-containing protein kinase family protein (.1.2) AT2G45910 168 / 9e-46 U-box domain-containing protein kinase family protein (.1) AT1G16760 144 / 2e-37 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G26150 144 / 3e-37 protein kinase family protein (.1) AT1G72760 142 / 1e-36 Protein kinase superfamily protein (.1) AT1G17540 142 / 1e-36 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G31230 141 / 2e-36 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G78940 140 / 2e-36 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT5G61560 139 / 9e-36 U-box domain-containing protein kinase family protein (.1.2) AT5G51270 137 / 5e-35 U-box domain-containing protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018835 [exp] 323 / 3e-103 AT2G45910 522 / 4e-174 U-box domain-containing protein kinase family protein (.1) Lus10036359 [exp] 235 / 6e-70 AT2G45910 598 / 0.0 U-box domain-containing protein kinase family protein (.1) Lus10014772 [exp] 204 / 4e-58 AT3G49060 901 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10036362 [exp] 203 / 1e-57 AT3G49060 895 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10036363 [exp] 177 / 4e-49 AT2G45910 528 / 9e-178 U-box domain-containing protein kinase family protein (.1) Lus10026439 [exp] 145 / 4e-38 AT5G12000 662 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008466 [exp] 144 / 2e-37 AT5G12000 608 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10035712 [exp] 140 / 1e-36 AT1G16760 624 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024212 [exp] 142 / 2e-36 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G160200 [exp] 206 / 4e-59 AT2G45910 650 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.014G084900 [exp] 204 / 3e-58 AT2G45910 857 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.002G160300 [exp] 156 / 1e-41 AT2G45910 559 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.012G143100 [exp] 151 / 1e-39 AT3G49060 706 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Potri.007G001900 [exp] 142 / 7e-37 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.014G001700 [exp] 140 / 5e-36 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G233000 [exp] 138 / 3e-35 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.006G078500 [exp] 138 / 3e-35 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G002400 [exp] 137 / 4e-35 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G198300 [exp] 136 / 1e-34 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10017798 pacid=23177702 polypeptide=Lus10017798 locus=Lus10017798.g ID=Lus10017798.BGIv1.0 annot-version=v1.0 ATGTCGAGCAAATCACTAGTTGAACAAAAGGTGTACGTAGCAGTTGGAATGGTTGTTCAAGACAGCAAGTCTGTGTTGATGTGCGCACTACACAACCATT CTGCCGCCAACAATATCTGCCCTTTCTCGTTCACCAACCGCCATCTCTTTCTAATGGAGGATGGTCTGGGATTCAGGACGAGGAGATCGAACGGGATGGA GCTCATAAGATACTCGATCACTACATCTGCATTTGTAACAGCATGGGGTTGCTGTATAATCCAGAAAGGTGATATCAGTCCGCTGCCAGGCTCCTGTCTC TTGTCGAATCTATTTCGTCTGCACTGGTCGCCTTATCCATATAAGAACCACATTGCAGAGACAGCCCATAAGGTGAAGGATTTAGAGCAGGAAATCATCT CTGTCGTAGAAGTGCTGAAGAAGTGCAGGAAAGAACGAGATGAAACGCAGATAGAACGTGATAACGTGGTGAAGGAAGCAGAGGAGCTCCAGAAGACCAT ATCGGAGCAAGTCTCAAGTTCAATATCGACAGAAGCTGCAACCTTGTTGTTCACTAAATCAGATATTGAACAAGCGACTAACAACTACCATGAATCAGTC AAGAATGGAGAAGGTGGATTCGGTAACATTTACCGAGCTGAGCTCCAATATACACAAGTTGCTATCGCCGCCGAGGTCTTCTCCGTACTCATCTTCCTCC AGTCCTGCAAACCGGATAGCATCGTCCACGGCGATGTGAAGCCTTCCAACATCCTCCTGGATGCCAATTTCTTCAGCAAGCTAAGTGACTTCAGGATCGC TCGCTTGCTCAAGTACAAGGAAGGCTCCTCCGCCAATCAGACGCTGATATGGAGGACAGTGGCGGAATTAGGGGGGACTCCGCCGTACATAGATCCAGAG TTCTTCTCCAGCGGGATTCTGACGTCCAAGTCCGATGTGTACTCGTTTGGGGTAGTTTTGATGCGGCTGTTGACAGCAAGATCAGCAATAGGGCTAACAG CGGAGGTGCAGTGCGCACTCAATGACAGGAAATTGAAGGAGATTTTGGATGAATCGGCCGGAGAATGGTCGCTGGCAAGAGCGAAAGAGGTGGCTAAGTT GGCGGTTTGGTGCTGTGAGAAGGATCGGCAGAGGCGGCCGGATCTTGCCGCGGAAGTTTGGGAAGTGCTCAAGTTCTTCTGCTTTTTTGGAAGACAGAGT GATGAAGTTACTCCGAAGCAAATGACCGACAGCTAG
AA sequence Show only first row Show all	>Lus10017798 pacid=23177702 polypeptide=Lus10017798 locus=Lus10017798.g ID=Lus10017798.BGIv1.0 annot-version=v1.0 MSSKSLVEQKVYVAVGMVVQDSKSVLMCALHNHSAANNICPFSFTNRHLFLMEDGLGFRTRRSNGMELIRYSITTSAFVTAWGCCIIQKGDISPLPGSCL LSNLFRLHWSPYPYKNHIAETAHKVKDLEQEIISVVEVLKKCRKERDETQIERDNVVKEAEELQKTISEQVSSSISTEAATLLFTKSDIEQATNNYHESV KNGEGGFGNIYRAELQYTQVAIAAEVFSVLIFLQSCKPDSIVHGDVKPSNILLDANFFSKLSDFRIARLLKYKEGSSANQTLIWRTVAELGGTPPYIDPE FFSSGILTSKSDVYSFGVVLMRLLTARSAIGLTAEVQCALNDRKLKEILDESAGEWSLARAKEVAKLAVWCCEKDRQRRPDLAAEVWEVLKFFCFFGRQS DEVTPKQMTDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45910			U-box domain-containing protei...		Lus10017798 [exp]	0	1
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10028203 [exp]	2.2	0.9462
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10033076 [exp]	2.4	0.9422
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10028102 [exp]	3.0	0.9301
AT5G51160			Ankyrin repeat family protein ...		Lus10029089 [exp]	5.7	0.9028
					Lus10023010 [exp]	6.5	0.9160
AT2G39550		GGB, ATGGT-IB, ...	GERANYLGERANYLTRANSFERASE-I BE...		Lus10000944 [exp]	6.9	0.8555
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10018138 [exp]	7.2	0.9286
					Lus10003899 [exp]	7.7	0.8498
					Lus10031873 [exp]	8.4	0.9210
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10014337 [exp]	9.8	0.8746

Compare expression of checked genes

Lus10017798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.