Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026444 [exp] 183 / 7e-56 ND / Lus10027613 [exp] 155 / 2e-45 ND / Lus10006886 [exp] 136 / 2e-38 ND / Lus10039353 [exp] 134 / 3e-36 ND / Lus10007415 [exp] 128 / 8e-35 ND / Lus10038642 [exp] 118 / 5e-34 ND / Lus10007416 [exp] 117 / 7e-32 ND / Lus10027118 [exp] 102 / 2e-27 ND / Lus10029488 [exp] 85 / 3e-19 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017801 pacid=23177701 polypeptide=Lus10017801 locus=Lus10017801.g ID=Lus10017801.BGIv1.0 annot-version=v1.0 ATGTCCGCCTGTGTTGTCAAACTCACTGCCATTTTTCAGGAACACCGCATAGAAGGATATACTGACCCAGGTGATGCTGCAGAGGTGGTTGATCTCATTA TAGAAGGTGCTATTTACAAAATTCACAATCCCTACCTTATACGAGCTCGACTTTGTATGCGCTCATGCCCGGGATATTTTGCTCTTGCAATTCGCTCTGA GCATCTGCTCCGAAAAGTTGACGAAGACCTAGATCGGCCATTTTTCCCAGTTGATGTCTTCAACTTAGTCAGCCTTCAATCTCTGCGATCCCCACATGCA CGCCGAAACGCTTCGTCAGATGTTATTGGTCGTCTCACCGTAGTTACAAGGCCAGTTACTTCGGTTGAAGGGACAATCAACTTCACGTTTGTTGTTGACC ATCCCAGCAATGAGCGCTTGGTTGTCCGCTACATAAAGTTTCAACCGGACGTTGAATTTGACCTCCAACAAATTGCCACAATAGAACGGCTTACGCCTAT CATTTGCATTCTAACATGCCTCAAGGTCACAAATCCAGCAGCTGACGGTCTCATCCTTCGGAGTACTGGTGCCTCTCGCATTGTTTTCCCATCATTCTCC TCGCCTTATCGCTAA
AA sequence Show only first row Show all	>Lus10017801 pacid=23177701 polypeptide=Lus10017801 locus=Lus10017801.g ID=Lus10017801.BGIv1.0 annot-version=v1.0 MSACVVKLTAIFQEHRIEGYTDPGDAAEVVDLIIEGAIYKIHNPYLIRARLCMRSCPGYFALAIRSEHLLRKVDEDLDRPFFPVDVFNLVSLQSLRSPHA RRNASSDVIGRLTVVTRPVTSVEGTINFTFVVDHPSNERLVVRYIKFQPDVEFDLQQIATIERLTPIICILTCLKVTNPAADGLILRSTGASRIVFPSFS SPYR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10017801 [exp]	0	1
					Lus10017800 [exp]	2.4	0.8923
AT5G24230			Lipase class 3-related protein...		Lus10018097 [exp]	6.6	0.8225
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10014773 [exp]	9.8	0.8555
AT5G66740			Protein of unknown function (D...		Lus10026031 [exp]	12.0	0.8905
AT2G06040			unknown protein		Lus10017169 [exp]	16.7	0.8470
					Lus10039892 [exp]	21.6	0.8355
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10020001 [exp]	25.0	0.7823
					Lus10038642 [exp]	25.7	0.8330
					Lus10043100 [exp]	26.2	0.8322
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10003481 [exp]	28.0	0.8279

Compare expression of checked genes

Lus10017801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.