Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00660 848 / 0 ATRH8 RNAhelicase-like 8 (.1.2) AT2G45810 788 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT3G61240 777 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT3G19760 293 / 9e-95 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT3G13920 286 / 6e-92 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4) AT1G72730 282 / 3e-90 DEA(D/H)-box RNA helicase family protein (.1) AT1G54270 281 / 3e-90 EIF4A-2 eif4a-2 (.1.2) AT1G51380 279 / 2e-89 DEA(D/H)-box RNA helicase family protein (.1) AT5G11200 263 / 6e-83 DEAD/DEAH box RNA helicase family protein (.1.2.3) AT5G11170 263 / 6e-83 DEAD/DEAH box RNA helicase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014783 [exp] 878 / 0 AT4G00660 853 / 0.0 RNAhelicase-like 8 (.1.2) Lus10030377 [exp] 874 / 0 AT4G00660 850 / 0.0 RNAhelicase-like 8 (.1.2) Lus10017407 [exp] 289 / 4e-93 AT3G19760 728 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10010206 [exp] 278 / 1e-88 AT3G19760 717 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10014260 [exp] 262 / 2e-82 AT5G11200 794 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2.3) Lus10006878 [exp] 255 / 6e-80 AT3G13920 787 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10037620 [exp] 255 / 6e-80 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10017153 [exp] 253 / 3e-79 AT3G13920 785 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10025960 [exp] 261 / 3e-76 AT5G66150 1097 / 0.0 Glycosyl hydrolase family 38 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G081100 [exp] 879 / 0 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.002G157500 [exp] 877 / 0 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.007G070000 [exp] 296 / 7e-96 AT3G19760 689 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.005G093900 [exp] 295 / 1e-95 AT3G19760 693 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.018G061050 [exp] 282 / 2e-90 AT3G13920 793 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.006G225700 [exp] 282 / 3e-90 AT3G13920 797 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.001G197900 [exp] 280 / 1e-89 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.003G043700 [exp] 279 / 4e-89 AT3G13920 791 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.006G253100 [exp] 263 / 5e-83 AT5G11170 808 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.018G028600 [exp] 263 / 1e-82 AT5G11170 807 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10017804 pacid=23177696 polypeptide=Lus10017804 locus=Lus10017804.g ID=Lus10017804.BGIv1.0 annot-version=v1.0 ATGGACAACAGTAACACCAACTACAACAGAGCGAGGTATCCGCCTGGTATGGTCGTTGGGAGAGCCGGAGGAATGAATGCGAACCCTAATTTTCAGTCCA GGCCCCCGCATCAGCAGTACGTGCAGAGGAGTTTGATGCCGAATCACCAGCAGTTTCAGCATCCCCAGCAGCAGCATCAACAATATCAGCAACAACAACA GTGGTTGAGGAGGAATCAGTTACCTGCTTCCGGTTCCATGGCCGACGAGGTGGAAAAGACAGTTCAGTCTGAGGAGGCCGTTGACTCAAGTTCACAAGAT TGGAAGGCAAGGCTAAAGATGCCTGGACCAGATACACGTTTCCAGACAGAGGATGTCACAGCTACAAAAGGGAACGAGTTTGAGGACTATTTTCTGAAAC GTGAACTGTTAATGGGAATATACGAGAAAGGGTTTGAAAGACCATCTCCAATTCAAGAAGAGAGTATACCTATTGCGCTTACTGGCAGTGATATTCTGGC TAGAGCAAAAAATGGAACGGGGAAAACAGCTGCATTCTGTATTCCAGCTCTGGAGAAAATAGACCAAGATAACAATGTTATTCAAGCTGTTATCTTGGTT CCAACTCGTGAGTTAGCTCTTCAAACTTCACAAGTCTGTAAAGAGCTGGGAAAACATTTGAGAATACAAGTAATGGTCACTACCGGTGGTACAAGTTTGA AGGATGATATCATGCGTCTCTATCAACCTGTCCATCTGCTTGTTGGAACTCCTGGAAGAATTTTAGATCTTGCAAAAAAGGGTGTCTGCATTTTGAAAGA CTGCTCGATGCTTGTTCTGGATGAGGCCGATAAGTTACTGTCTCCAGAATTTCAACCTTCAGTGGAGCAGTTGATTCGCTTTCTTCCCAGAAGCCGCCAG ATGTTAATGTTTTCTGCTACATTTCCTGTTACTGTAAAGGACTTCAAAGATAGATATCTTCAAAAGCCCTATGTGATCAATCTTATGGATGAGTTGACGC TTAAAGGTATCACGCAGTTCTATGCTTTTGTTGAGGAACGGCAGAAAGTCCATTGTCTGAACACTCTATTTTCTAAGCTGCAAATAAATCAGTCTATCAT CTTCTGCAACTCAGTTAATCGAGTAGAGCTGTTGGCCAAGAAGATTACTGAACTCGGTTATTCCTGTTTCTATATCCATGCAAAAATGTTGCAAGATCAC CGTAATAGAGTTTTCCATGACTTTCGCAATGGAGCATGCAGGAATCTTGTTTGCACTGATCTATTCACAAGAGGTATAGATATTCAGGCTGTGAATGTTG TGATTAACTTTGACTTCCCCAAAAACGCAGAAACGTATCTACACAGGGTTGGTCGATCAGGGAGGTTCGGACACCTTGGGTTAGCGGTGAACTTGATCAC TTTTGAGGACCGTTTCAATTTGTATAGGATCGAGCAAGAACTTGGGACTGAAATTAAGCAGATTCCTCCACATATTGATCAGGCAATCTATTGCCGGTAG
AA sequence Show only first row Show all	>Lus10017804 pacid=23177696 polypeptide=Lus10017804 locus=Lus10017804.g ID=Lus10017804.BGIv1.0 annot-version=v1.0 MDNSNTNYNRARYPPGMVVGRAGGMNANPNFQSRPPHQQYVQRSLMPNHQQFQHPQQQHQQYQQQQQWLRRNQLPASGSMADEVEKTVQSEEAVDSSSQD WKARLKMPGPDTRFQTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQAVILV PTRELALQTSQVCKELGKHLRIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVLDEADKLLSPEFQPSVEQLIRFLPRSRQ MLMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDH RNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITFEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Lus10017804 [exp]	0	1
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10032623 [exp]	1.0	0.9048
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10009572 [exp]	3.2	0.8909
AT3G48150		CDC23, APC8	anaphase-promoting complex sub...		Lus10004242 [exp]	4.0	0.8635
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10012968 [exp]	6.0	0.8752
AT4G01270			RING/U-box superfamily protein...		Lus10005127 [exp]	7.1	0.8778
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10020167 [exp]	9.2	0.8666
AT3G20070		TTN9	titan9 (.1.2)		Lus10026248 [exp]	14.0	0.8709
AT5G38690			Zinc-finger domain of monoamin...		Lus10017575 [exp]	15.9	0.8563
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10030831 [exp]	16.4	0.8175
AT1G73720		SMU1	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10038425 [exp]	19.2	0.8623

Compare expression of checked genes

Lus10017804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.