Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018989 [exp] 158 / 3e-43 AT3G05030 750 / 0.0 sodium hydrogen exchanger 2 (.1.2) Lus10007786 [exp] 142 / 4e-40 ND / Lus10034984 [exp] 131 / 6e-38 ND / Lus10004845 [exp] 125 / 7e-35 ND / Lus10039960 [exp] 126 / 1e-34 ND / Lus10007787 [exp] 123 / 2e-31 ND / Lus10037051 [exp] 98 / 3e-22 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10026431 [exp] 86 / 1e-19 ND / Lus10022553 [exp] 69 / 4e-13 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017806 pacid=23177728 polypeptide=Lus10017806 locus=Lus10017806.g ID=Lus10017806.BGIv1.0 annot-version=v1.0 ATGAAGGCGAATTACCTAGGTATTTTTAAAAAAAGGATGCGGCTTATTTCATTGAGTATAACTGGTGTGAACATCTGGTGGAAATCATCAAAGCAGCAGC TGTTTCTGTTAGACCTAGTTGGAGTGCCTGCTGACGAACGTATCCCTATAGAAAGGCCTATTGTTCGATACTGGACAAACAGCGTACTCAAGCACCATTT TCAAGCATTTGATCAGATTAGTGGTTTTGAAAATGGTTTCATCATTGAATGGATTTCATGTAGCAGAGACGATGATGATGTGGTATGGTTTGAAAGCAAA GAGATGTGTATTGGGAGGTCAAAAGAGCCTCGAAAAGAGCTTGTAACACATCTAACCATGATAGGTCCACCGTCAACTATTGGAGCTAAGGAGTGGTTGA TGTGGTTTGATAATGTCATACGTGTTATGAATATTCAGATTGGTTCATTTACATCTTTGAACGAGAAACTTGACGACCAAGCCATTGTCACACGTGAAAC ACATGGAACACTGGATTCCATCTCCTGGCCAGCCAGAGAGCAGAGCAAGGGGTTAAGGAAGAAGCATGTCAATGAGGCAAGGGAGGCAAGGAAAGAGGTG AACCAGAAGAAGGATGATGTTAAGGGAGGAGAAGATAGAGTGGATGACCAAAGGAAAGTGAGCTTAGAAAGGAAGGAACAAATCGAGAAGGATGGCAAGG ATTGTGAGGATAGTGGTACTGCAGTGGCTGATGAGGTAACCGGGAAAGATGCTCTAGCTAGATTAGGGGCATCTCTCATGAAAGAGTCAATGGAAGGGAA TAAGGAGGGGATACGGACATCAAGGAAAGTGAGGATGTTGGTGTATAATTTGGTGATGAGGGTCTCTGTGTTTAAGGAGCAAGGGGAACAAGATTCTTTG GAGGAAGTTGTGTAG
AA sequence Show only first row Show all	>Lus10017806 pacid=23177728 polypeptide=Lus10017806 locus=Lus10017806.g ID=Lus10017806.BGIv1.0 annot-version=v1.0 MKANYLGIFKKRMRLISLSITGVNIWWKSSKQQLFLLDLVGVPADERIPIERPIVRYWTNSVLKHHFQAFDQISGFENGFIIEWISCSRDDDDVVWFESK EMCIGRSKEPRKELVTHLTMIGPPSTIGAKEWLMWFDNVIRVMNIQIGSFTSLNEKLDDQAIVTRETHGTLDSISWPAREQSKGLRKKHVNEAREARKEV NQKKDDVKGGEDRVDDQRKVSLERKEQIEKDGKDCEDSGTAVADEVTGKDALARLGASLMKESMEGNKEGIRTSRKVRMLVYNLVMRVSVFKEQGEQDSL EEVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10017806 [exp]	0	1
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10024707 [exp]	1.4	0.8455
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10010863 [exp]	6.5	0.7675
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10005238 [exp]	11.6	0.8050
AT5G51105			Protein of unknown function (D...		Lus10043285 [exp]	15.1	0.7870
AT1G21130		IGMT4	indole glucosinolate O-methylt...		Lus10030187 [exp]	18.0	0.7846
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10025692 [exp]	20.1	0.7797
AT3G51810		AT3, GEA1, ATEM...	GUANINE NUCLEOTIDE EXCHANGE FA...		Lus10027816 [exp]	22.1	0.6851
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10013753 [exp]	22.2	0.7730
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033787 [exp]	25.6	0.7619
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041829 [exp]	26.5	0.7545

Compare expression of checked genes

Lus10017806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.