Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001876 [exp] 121 / 4e-32 AT1G01470 178 / 3e-54 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10018837 [exp] 71 / 7e-05 ND / Lus10022018 [exp] 0 / 1 AT1G69490 58 / 6e-11 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10022017 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G028700 [exp] 40 / 0.0005 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10017807 pacid=23177709 polypeptide=Lus10017807 locus=Lus10017807.g ID=Lus10017807.BGIv1.0 annot-version=v1.0 ATGAACGGCGATCCCTTTAAGAAGGTGGAGAAGGCAGAGCTAATCGATCCCAGATCATTAGCAAGGGTTTGGAGATCGTTGAGGAAGTTTCAGAAGGTTA TGTATTTCCGGTGGGTTTTCGCTTTAATCCGACGGAGGAAGAACTCATCAATTATTACCTCAAGGGTCAAGCCAAAGGGGAGATTGAACCTGATACATGA GATCGACCTTTACGGTGATAAAACTCCTTGGGAGATCTTTCCTGGCAATGACAGATTTTTCACTTTCACAAAACTTAAGAAAGCCAGCGCTAAGAGAGTT TCCTGGAATTTAGCTTGTGGTAAATGGAAATGGCATGGAAACAATAGAGGTGTTGATATTAAGGATGCTAGGGAGAGACAAATTGGAATAAAGAAGCAAT TTAGTTTCAAAAAACACTTCTCAAGTGATCCAGCCTTGTTTGACACCAGCAGCAGAACTCTCTATCGGGATCTTGATGATTTTTTCCGGCTCACTGAAGC CAATGCTACTGCTGATTTGTACATGACCATTGATCAAGACGACTCAGGAAGCGCTGCTGGTACTTCAAGTCAATCAACATCGTCGTTGGTAGTTGAAGGA GATAATACCGGTTATAAACAGCTCTCAAGTGATCCAGCTTTCTTTGACACCAGCAGCAGCTGA
AA sequence Show only first row Show all	>Lus10017807 pacid=23177709 polypeptide=Lus10017807 locus=Lus10017807.g ID=Lus10017807.BGIv1.0 annot-version=v1.0 MNGDPFKKVEKAELIDPRSLARVWRSLRKFQKVMYFRWVFALIRRRKNSSIITSRVKPKGRLNLIHEIDLYGDKTPWEIFPGNDRFFTFTKLKKASAKRV SWNLACGKWKWHGNNRGVDIKDARERQIGIKKQFSFKKHFSSDPALFDTSSRTLYRDLDDFFRLTEANATADLYMTIDQDDSGSAAGTSSQSTSSLVVEG DNTGYKQLSSDPAFFDTSSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10017807 [exp]	0	1
AT5G51140			Pseudouridine synthase family ...		Lus10016743 [exp]	4.5	0.7894
AT4G01310			Ribosomal L5P family protein (...		Lus10010251 [exp]	5.6	0.8074
AT4G32790			Exostosin family protein (.1)		Lus10043238 [exp]	6.5	0.8022
AT1G69630			F-box/RNI-like superfamily pro...		Lus10006319 [exp]	7.7	0.7938
AT2G37025		TRFL8	TRF-like 8 (.1.2)		Lus10026522 [exp]	17.3	0.7731
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Lus10013086 [exp]	19.1	0.7674
AT3G22104			Phototropic-responsive NPH3 fa...		Lus10018499 [exp]	21.0	0.7563
AT5G06810			Mitochondrial transcription te...		Lus10018548 [exp]	21.9	0.6853
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Lus10014828 [exp]	23.0	0.7621
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10036074 [exp]	25.6	0.7657

Compare expression of checked genes

Lus10017807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.