Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45820 170 / 7e-54 Remorin family protein (.1) AT3G61260 167 / 2e-52 Remorin family protein (.1) AT5G23750 149 / 2e-45 Remorin family protein (.1.2) AT3G48940 146 / 1e-44 Remorin family protein (.1) AT4G00670 72 / 3e-16 Remorin family protein (.1) AT1G63295 68 / 2e-14 Remorin family protein (.1) AT2G41870 51 / 8e-08 Remorin family protein (.1) AT3G57540 49 / 6e-07 Remorin family protein (.1) AT1G67590 47 / 4e-06 Remorin family protein (.1.2) AT1G30320 45 / 2e-05 Remorin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018840 [exp] 246 / 1e-83 AT3G61260 206 / 1e-67 Remorin family protein (.1) Lus10014785 [exp] 160 / 6e-50 AT3G61260 177 / 1e-56 Remorin family protein (.1) Lus10030379 [exp] 157 / 1e-48 AT3G61260 178 / 4e-57 Remorin family protein (.1) Lus10039215 [exp] 144 / 3e-43 AT3G61260 196 / 7e-64 Remorin family protein (.1) Lus10027460 [exp] 138 / 5e-41 AT3G61260 192 / 2e-62 Remorin family protein (.1) Lus10001477 [exp] 107 / 9e-29 AT5G23750 162 / 3e-50 Remorin family protein (.1.2) Lus10008014 [exp] 103 / 3e-28 AT5G23750 158 / 5e-50 Remorin family protein (.1.2) Lus10008477 [exp] 103 / 4e-27 AT5G23750 154 / 5e-47 Remorin family protein (.1.2) Lus10024514 [exp] 76 / 3e-17 AT5G23750 113 / 5e-32 Remorin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G081300 [exp] 188 / 1e-60 AT3G61260 199 / 4e-65 Remorin family protein (.1) Potri.002G157700 [exp] 186 / 6e-60 AT3G61260 167 / 2e-52 Remorin family protein (.1) Potri.012G140800 [exp] 152 / 2e-46 AT5G23750 98 / 2e-25 Remorin family protein (.1.2) Potri.015G143600 [exp] 150 / 1e-45 AT5G23750 111 / 1e-30 Remorin family protein (.1.2) Potri.003G124400 [exp] 126 / 1e-36 AT5G23750 129 / 6e-38 Remorin family protein (.1.2) Potri.001G107000 [exp] 116 / 1e-32 AT5G23750 55 / 2e-09 Remorin family protein (.1.2) Potri.006G053200 [exp] 62 / 1e-11 AT3G57540 196 / 2e-61 Remorin family protein (.1) Potri.016G054400 [exp] 62 / 1e-11 AT2G41870 206 / 7e-66 Remorin family protein (.1) Potri.012G140900 [exp] 57 / 8e-11 AT3G48940 78 / 6e-19 Remorin family protein (.1) Potri.008G178300 [exp] 48 / 1e-06 AT1G67590 306 / 1e-102 Remorin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03766 [flax] [poplar] Remorin_N Remorin, N-terminal region PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10017811 pacid=23177721 polypeptide=Lus10017811 locus=Lus10017811.g ID=Lus10017811.BGIv1.0 annot-version=v1.0 ATGGCGGAGCAAGAGGCGACGAAGGTGGCAGCTGAAACGGCAACGCCAGTTGCTGCTCCAGTTGTAGCTGCTGAAGCTCCGGCTCCGGCGCCGGCCTCTG TCGAGGAGAAGAGCATGGTTCCGGTGCCTGAAGAAAACGCCGCAGAGAAACCAGAAGAGTCCAAAGCTCTGGCTCTCGTGGAAACAAAGGCACCAGAGGC TGCTCCAAAAAAGATATCAGGGGGATCCCATGATAGAGGCAAGTTTTATGTTGCTCTTGCTGAGCTAGAGAAAGAGAAGACGCTGTCCTTTGTCAGGGCA TGGGAAGACAGTGAGAAATCTAAAGTCACCAACAAGGCTGAGAAGCAACTCTCTGATGTGGCTGCATGGGAGAACCACAAGAAGGCAGCTGTCGAAGCTA AACTTAAAAAGATTGAGGAGCAATTGGAGAAGAAAAAGGCACAATATGCAGAGCAAATGAAGAACAAAATAGCTCTAATCCACAAACAAGCTGAAGAGAA AAGAGCAATGGTAGAAGCCAAGCGGGGAGAAGATCTTCTCAAAGCTGAAGAATTGGCTGCTAAATACCGTGCCACTGGCCAAACTCCTAAGAAGATGCTT GGTTGCTTCTGA
AA sequence Show only first row Show all	>Lus10017811 pacid=23177721 polypeptide=Lus10017811 locus=Lus10017811.g ID=Lus10017811.BGIv1.0 annot-version=v1.0 MAEQEATKVAAETATPVAAPVVAAEAPAPAPASVEEKSMVPVPEENAAEKPEESKALALVETKAPEAAPKKISGGSHDRGKFYVALAELEKEKTLSFVRA WEDSEKSKVTNKAEKQLSDVAAWENHKKAAVEAKLKKIEEQLEKKKAQYAEQMKNKIALIHKQAEEKRAMVEAKRGEDLLKAEELAAKYRATGQTPKKML GCF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61260			Remorin family protein (.1)		Lus10017811 [exp]	0	1
AT3G61260			Remorin family protein (.1)		Lus10018840 [exp]	1.0	0.9274
AT2G20930			SNARE-like superfamily protein...		Lus10027833 [exp]	5.3	0.7760
AT1G05870			Protein of unknown function (D...		Lus10025562 [exp]	6.0	0.8193
AT2G23970			Class I glutamine amidotransfe...		Lus10033793 [exp]	6.6	0.7855
AT5G63640			ENTH/VHS/GAT family protein (....		Lus10012506 [exp]	7.0	0.8170
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10014978 [exp]	7.3	0.8088
AT3G06070			unknown protein		Lus10010508 [exp]	8.7	0.8271
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10011290 [exp]	9.6	0.8416
AT2G31680		AtRABA5d	RAB GTPase homolog A5D (.1)		Lus10026731 [exp]	9.8	0.8123
					Lus10034430 [exp]	16.2	0.7807

Compare expression of checked genes

Lus10017811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.