Plant FIBer expression Database

Lus10017815 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G01760 398 / 1e-136 adenosine deaminases;RNA binding;RNA binding;adenosine deaminases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G081400
[exp]
453 / 5e-158 AT1G01760 475 / 6e-167 adenosine deaminases;RNA binding;RNA binding;adenosine deaminases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0109 CDA PF02137 A_deamin Adenosine-deaminase (editase) domain
Representative CDS sequence
>Lus10017815 pacid=23177686 polypeptide=Lus10017815 locus=Lus10017815.g ID=Lus10017815.BGIv1.0 annot-version=v1.0
ATGGAATCCGGTATTGGAGATGCTGGCACCGTAGCTGTTCGGTATCCGGGGAAAGGATGGGCAGAGAATGTATCGGAGAAGGTGATTTCGCTATACAATT
CTCTGCCCAAGAAAGGAAAGCCGCAGGGAAGAGAAGTCACTGTCTTGGCCGCATTTCTCATCTCCTCGCCTTCTCGAGTTCCAGAGTTGGAAGTAATCGC
TTTAGGGACGGGGACCAAATGTATAGGGAGGTCACGCTTGAGCAATCTTGGCGATGTTGTGAATGATTCCCATGCCGAGATTATTGCGCGGAGAGCATTG
ATGAGGTTATTCTATGCAGAGATTCAGAGGCTTAGCGGATCTTTGAGTAAGCATGAATTGGAAAATGAAAAGTTGCAGATTGACGGTGTTGAAAATCGAA
TGTTCGATGTAGACGAGGATAGCAGTAACCCAGTGAAGTTCAAGCTGAGAGCTGGTTGGGAATTGCATATGTATATTTCGCAGTTGCCATGTGGGGATGC
TTCTTTAAGTTCACCATTGTCTTCCTCGAGAAATGTGTTCCTAAGAAGAAAGGAGGATTTAGTCAACGGTTGCACCGGTGAGCCCTCAAGAACGAAACCA
AGAACATATGTTGATGGTCCACAGAGTTATGGCCTGGTTCAGCGGAAGCCAGGCCGCGGTGATGCAACATTTTCTGTGTCTCTATCTCTTATTTCAGGAG
CTTTGCTTTCACACTTCATTCAACCCGTTTACCTTTCCTCAATCACCGTTGGAAAGATTCCTGGCAGTGTCGACAGTTTTCCTCTTGAAGAACACTTGAA
AAGATCTTTGTATGGTCGGATTTTTCCATTGACCGATGCGATACTTGCTCCGTTTCGAGTACATAAGCCGCTTTTCTGGGTTGCCGGTGTACCTCCTGAA
GAGTTCCAGCATGCAGATACTGCAGTAGCCACTTTAACTTGCGGGTATTCCATATGTTGGAACAACTTAGGCTTGCATGAAGTTGTTCTTGGGACTACGG
GTAGAAAGCAGGGCACCTCTACGAAAGGGGCTGTTTCTCCATCCACTCGGTCATCTCTATGCAAAAGGAGATTGCTGGATACGTTTTTGACGCTGAGGCA
GGGTATTGAAAATACGTACCCTTTCAATGAGACTTCTTACAGAGAATTCAAGGACAGTGTAAGGGAGTACAGTTTGGCTGCGAAAACTTTTAAGGAGAGG
GAGCCATTTGATAATTGGCCGTCGAAACCATCGGATCTTGAAGCATTCTTTCAGTCTGCCAAGGGATGTTAA
AA sequence
>Lus10017815 pacid=23177686 polypeptide=Lus10017815 locus=Lus10017815.g ID=Lus10017815.BGIv1.0 annot-version=v1.0
MESGIGDAGTVAVRYPGKGWAENVSEKVISLYNSLPKKGKPQGREVTVLAAFLISSPSRVPELEVIALGTGTKCIGRSRLSNLGDVVNDSHAEIIARRAL
MRLFYAEIQRLSGSLSKHELENEKLQIDGVENRMFDVDEDSSNPVKFKLRAGWELHMYISQLPCGDASLSSPLSSSRNVFLRRKEDLVNGCTGEPSRTKP
RTYVDGPQSYGLVQRKPGRGDATFSVSLSLISGALLSHFIQPVYLSSITVGKIPGSVDSFPLEEHLKRSLYGRIFPLTDAILAPFRVHKPLFWVAGVPPE
EFQHADTAVATLTCGYSICWNNLGLHEVVLGTTGRKQGTSTKGAVSPSTRSSLCKRRLLDTFLTLRQGIENTYPFNETSYREFKDSVREYSLAAKTFKER
EPFDNWPSKPSDLEAFFQSAKGC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G01760 adenosine deaminases;RNA bindi... Lus10017815
[exp]
0 1
AT1G03260 SNARE associated Golgi protein... Lus10028016
[exp]
4.9 0.6208
AT1G12350 ATCOAB 4-phospho-panto-thenoylcystein... Lus10029374
[exp]
11.2 0.6592
AT4G15910 ATDI21 drought-induced 21 (.1) Lus10037497
[exp]
27.9 0.6199
AT4G20070 ATAAH allantoate amidohydrolase (.1) Lus10038372
[exp]
31.9 0.6162
AT1G64160 Disease resistance-responsive ... Lus10028749
[exp]
37.4 0.5511
AT3G07610 IBM1 increase in bonsai methylation... Lus10004602
[exp]
40.4 0.5500
AT1G18660 zinc finger (C3HC4-type RING f... Lus10019075
[exp]
57.6 0.5504
AT4G35380 SEC7-like guanine nucleotide e... Lus10022975
[exp]
66.1 0.5872
AT1G01970 Tetratricopeptide repeat (TPR)... Lus10015865
[exp]
81.2 0.5154
AT2G32030 Acyl-CoA N-acyltransferases (N... Lus10032323
[exp]
84.9 0.5294

Lus10017815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.