Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68570 618 / 0 Major facilitator superfamily protein (.1) AT5G01180 438 / 3e-147 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 434 / 2e-145 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT3G54140 431 / 2e-144 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G62200 415 / 4e-138 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT1G69870 397 / 2e-130 NRT1.7 nitrate transporter 1.7 (.1) AT1G18880 375 / 1e-122 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT3G16180 374 / 8e-122 Major facilitator superfamily protein (.1) AT2G02020 367 / 9e-120 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT5G62680 366 / 1e-118 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018838 [exp] 954 / 0 AT1G68570 571 / 0.0 Major facilitator superfamily protein (.1) Lus10041466 [exp] 607 / 0 AT1G68570 850 / 0.0 Major facilitator superfamily protein (.1) Lus10035516 [exp] 449 / 2e-151 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10030947 [exp] 436 / 3e-146 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040099 [exp] 430 / 1e-143 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 425 / 5e-142 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 424 / 2e-141 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10021132 [exp] 418 / 2e-139 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10018207 [exp] 423 / 5e-139 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G034000 [exp] 848 / 0 AT1G68570 656 / 0.0 Major facilitator superfamily protein (.1) Potri.016G032000 [exp] 745 / 0 AT1G68570 590 / 0.0 Major facilitator superfamily protein (.1) Potri.006G033900 [exp] 737 / 0 AT1G68570 607 / 0.0 Major facilitator superfamily protein (.1) Potri.010G126300 [exp] 621 / 0 AT1G68570 901 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 439 / 1e-147 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.009G042400 [exp] 434 / 2e-145 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 431 / 3e-144 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.011G120000 [exp] 430 / 7e-144 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111800 [exp] 424 / 1e-141 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 421 / 1e-140 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10017817 pacid=23177725 polypeptide=Lus10017817 locus=Lus10017817.g ID=Lus10017817.BGIv1.0 annot-version=v1.0 ATGGAGAATGAGGATCAGAAGCTCACCGGCGACCAACAGCCGCCACCACGGCCGCATCCAGAGGCGGCTATTGCAGATAATTCGATTGGTGACCATGATT GCCAGAAGAGAAAGCTCGGTGGCATCGGAACAATGCCATTCATTTTGGGGAATGAAATATGTGACAAGTTTGCAGCAACTGGATTCCATGCCAACATGAT AACATATCTGACCCAAGTACTCAACTTACCCATGGTGAAGGCCTCCAATACACTTACCAACTTTGGTGGCACAGCCGGCTTCACACCTCTAATCGGGGCT CTCATTGCTGACTCTTTCGCTGGCCGCTTCTGGACCATCATCGTCGCTTCCTTAATCTACGAGCTGGGAATGGTGAGCATCACAATTTCGGCCACGCTAC CATCACTCCGTCCACCAGCTTGTCCATCCCAGCAGAACTGTCAAGAAGCCTCCTCTAAACAGCTATGGTTTCTCTACATGTCACTCCTTCTCACCTCGTT AGGGACCGGCGGACTCAGGCCTTGTGTCGTCACATTCGCGGCAGACCAATTCGACATGAGGAGATCGGCTGTGGAGTCTAGAGGGTGGAATTTCTTCAAT TGGTATTACTTCAGCATGGGGATAGCAACATTGACAGCCTTGACAGTGGTGGTTTACATACAAGACAACGTTGGTTGGAACTGGGGACTTGGCATCCCAA CTATTGCCATGGCATTGTCGATAGTTGCTTTTGTATTTGGTTCTCCTCTTTATAACAAATTGAAGCCTGGAGGGAGCCCTCTTATCAGATTGGCACAAGT CATAATTGCTTCCATCAAAAAGAGGAAAACGGTAGCTCCCCAAGACCCTCAACTTTTGTATCAGAACCGCCAACTTGATGCTCTGATTTCTGTCAATGGA AGGCTGGTGCACACCAATCAGTTCAGGTGCCTAGACAAAGCAACAATAGTGACAGAGGAAGATGCAAGACAGATAAGCGAAGATGGTTCAGGGAAACCTA ACCTGTGGCGGCTGGCGACGGTGCATCGAGTAGAAGAACTGAAATCCATCATAAGGGTTTTCCCAGTTTGGGCATCTGGGATTCTCCTAGTGGCAGCGTC CTCCCATCTCCATAGCTTTGTAATACTACAAGCCTTCACAATGGACCGTCGATTCCCCAATTCATCATCCTCCTTCAAAATTCCACCAGCCTCCCTATCA ATCTTCAGCGTCCTAACAATGATGATCGGTCTCGTCCTATACGAGCGCCTATTCGTGCCGTTCGCCCGTCGATTCACCAAAAACCCAGTAGGAGTGACCT GCCTTCAGCGGATGGGTATCGGTGCAGTCATCAACATCATAGCCACAATCGTCTCTGCTTTCGTGGAGATGAAGAGGAAGAAAGTCGCTGCTAGATACGG GTTGCTTGACGACCCGAAAGCGATCATACCCATCAGCGTGTTCTGGCTGATTCCGCAGTATGTACTCCATGGAACTGCTGAGGTGTTCAGTTCCGTGGGG CACATTGAATTTTTGTACGATCAGTCGCCGGAGAGTATGAGGAGCACGGCGTTGGCGCTTTACTCTCTGACCCTTTCGTTTGGGAACTATATAGGGACAG GGTTGGTGTCTACGGTACATAAGTATACGGGTAGTGAGGAGAATTGGCTGCCAGATAGGAATTTGAATAGGGGGAAATTGGATTACTATTACTGGTTGGT TACGGGGATTCAAGTTGTCAACTTTGGGTATTACTTGGTTGTTGCGTGGTTATATACTTGGAAGCCATTGGAAGAAGTCAAGGATGAGGAGGAGGTGGTG GAAATCAATGGACATACCGTGAATGGTGGGACGAAGGAATACGGAAATTGTGAGATGGGACCAATTTCTCAGACGAAAGAAGTTGTCTAG
AA sequence Show only first row Show all	>Lus10017817 pacid=23177725 polypeptide=Lus10017817 locus=Lus10017817.g ID=Lus10017817.BGIv1.0 annot-version=v1.0 MENEDQKLTGDQQPPPRPHPEAAIADNSIGDHDCQKRKLGGIGTMPFILGNEICDKFAATGFHANMITYLTQVLNLPMVKASNTLTNFGGTAGFTPLIGA LIADSFAGRFWTIIVASLIYELGMVSITISATLPSLRPPACPSQQNCQEASSKQLWFLYMSLLLTSLGTGGLRPCVVTFAADQFDMRRSAVESRGWNFFN WYYFSMGIATLTALTVVVYIQDNVGWNWGLGIPTIAMALSIVAFVFGSPLYNKLKPGGSPLIRLAQVIIASIKKRKTVAPQDPQLLYQNRQLDALISVNG RLVHTNQFRCLDKATIVTEEDARQISEDGSGKPNLWRLATVHRVEELKSIIRVFPVWASGILLVAASSHLHSFVILQAFTMDRRFPNSSSSFKIPPASLS IFSVLTMMIGLVLYERLFVPFARRFTKNPVGVTCLQRMGIGAVINIIATIVSAFVEMKRKKVAARYGLLDDPKAIIPISVFWLIPQYVLHGTAEVFSSVG HIEFLYDQSPESMRSTALALYSLTLSFGNYIGTGLVSTVHKYTGSEENWLPDRNLNRGKLDYYYWLVTGIQVVNFGYYLVVAWLYTWKPLEEVKDEEEVV EINGHTVNGGTKEYGNCEMGPISQTKEVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68570			Major facilitator superfamily ...		Lus10017817 [exp]	0	1
AT4G17920			RING/U-box superfamily protein...		Lus10004572 [exp]	8.7	0.6398
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10030684 [exp]	19.5	0.6117
AT1G65980		TPX1	thioredoxin-dependent peroxida...		Lus10023180 [exp]	21.5	0.5702
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10005614 [exp]	23.3	0.5892
AT2G40370		LAC5	laccase 5 (.1)		Lus10007532 [exp]	34.9	0.5823
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10012703 [exp]	45.9	0.5567
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10012552 [exp]	46.1	0.5773
AT4G29680			Alkaline-phosphatase-like fami...		Lus10007981 [exp]	49.3	0.5760
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10015848 [exp]	55.1	0.5621
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10018390 [exp]	57.1	0.5750

Compare expression of checked genes

Lus10017817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.