Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09530 71 / 6e-14 PRP10, PELPK1 proline-rich protein 10, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, hydroxyproline-rich glycoprotein family protein (.1) AT5G09520 58 / 2e-10 PELPK2 Pro-Glu-Leu|Ile|Val-Pro-Lys 2, hydroxyproline-rich glycoprotein family protein (.1) AT4G33585 45 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018841 [exp] 220 / 1e-70 AT5G09530 140 / 1e-38 proline-rich protein 10, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G114525 [exp] 66 / 2e-13 AT5G09520 / Pro-Glu-Leu|Ile|Val-Pro-Lys 2, hydroxyproline-rich glycoprotein family protein (.1) Potri.018G146200 [exp] 54 / 3e-09 AT5G09520 / Pro-Glu-Leu|Ile|Val-Pro-Lys 2, hydroxyproline-rich glycoprotein family protein (.1) Potri.007G114700 [exp] 47 / 6e-07 AT5G09520 / Pro-Glu-Leu|Ile|Val-Pro-Lys 2, hydroxyproline-rich glycoprotein family protein (.1) Potri.007G114375 [exp] 42 / 5e-05 AT5G09520 / Pro-Glu-Leu|Ile|Val-Pro-Lys 2, hydroxyproline-rich glycoprotein family protein (.1) Potri.014G126300 [exp] 42 / 0.0004 AT2G47540 114 / 1e-30 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.014G126500 [exp] 42 / 0.0004 AT2G47540 113 / 6e-30 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.014G126200 [exp] 42 / 0.0004 AT2G47540 114 / 3e-30 Pollen Ole e 1 allergen and extensin family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017818 pacid=23177705 polypeptide=Lus10017818 locus=Lus10017818.g ID=Lus10017818.BGIv1.0 annot-version=v1.0 ATGGCTTCCCTTATAGGATGTATTCCCCTTTTCCTCATGCTTGCTTTCTCCCTTGTTCCGGGAAATGGTGCCTCTCGCCGCTTGCTGGATGTTGAGCTTC CTAAGCCCCAACTGCCTTCTCTCGTTCTCCCTAAAGTTGAGCGTCCCCCTCTCCCCAAACTAGACTTCCCACAACTTCCTAAACCTGAACTACCTAAGCC CAATATTTCAGAAATCCCTAAACCTCAAGTTCCGCAACTCCCTAAACCTGAAATCCCACAAGTGCCCAAGCCTGAATTTCCGCAAGTGCCTGAGCCTGAG ATCCCACAATTGCCTAAGCCCGAGATCCCTCAAGTTCCAAAGCCTGAAGTTCCACAACTCGCTAAACCCGAGATCCCACAGTTGCCTAAGTCTGAAGTTC CGCAACTCGGTAAACCCGAGATCCCGCAATTGCCTAAGCCAGAAGTTCTAGAGCTCCCTCAACCTGAGCTCCCAGTACCTCCTCAAAATGTCAAACCCAC GAAATTGCCTACTCCTTCTGCAAAATTTGAAGTGCCAGAGCTTCCAAAACCTGATATTCCATCTCTCCCTAAACCTGAACTTCCGGAGTTTCCAAAGGTT GAAATTCCACAATTTCCCAAGCCCGAATTTCCGGAGCTTCCAAAACCCGAAATGCCCCAAATTCCAGAGTTTCCAAAACCTGAGCTGCCATCTTTTCCAA AACCCGAAATGCCCCATATTCCAGAACTTCCAAAACTTCCATTCCCAACCCTTCCCAAAGAGACTCCACTGCCTTATGTTCCCCATCCGACCACCACTTC TCCTTAA
AA sequence Show only first row Show all	>Lus10017818 pacid=23177705 polypeptide=Lus10017818 locus=Lus10017818.g ID=Lus10017818.BGIv1.0 annot-version=v1.0 MASLIGCIPLFLMLAFSLVPGNGASRRLLDVELPKPQLPSLVLPKVERPPLPKLDFPQLPKPELPKPNISEIPKPQVPQLPKPEIPQVPKPEFPQVPEPE IPQLPKPEIPQVPKPEVPQLAKPEIPQLPKSEVPQLGKPEIPQLPKPEVLELPQPELPVPPQNVKPTKLPTPSAKFEVPELPKPDIPSLPKPELPEFPKV EIPQFPKPEFPELPKPEMPQIPEFPKPELPSFPKPEMPHIPELPKLPFPTLPKETPLPYVPHPTTTSP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10017818 [exp]	0	1
AT4G38080			hydroxyproline-rich glycoprote...		Lus10033360 [exp]	1.4	0.9779
					Lus10003550 [exp]	1.4	0.9801
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10018841 [exp]	2.0	0.9727
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10034459 [exp]	2.4	0.9774
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10001093 [exp]	3.9	0.9394
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10033357 [exp]	4.2	0.9649
					Lus10033359 [exp]	4.5	0.9720
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Lus10010193 [exp]	6.0	0.9434
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10041747 [exp]	7.9	0.9556
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Lus10017394 [exp]	8.1	0.9458

Compare expression of checked genes

Lus10017818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.