Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45880 519 / 2e-179 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT4G00490 487 / 6e-169 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT5G45300 358 / 1e-116 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT4G15210 271 / 2e-85 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT2G32290 259 / 4e-80 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT4G17090 254 / 2e-78 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT3G23920 233 / 6e-70 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT5G55700 211 / 4e-62 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT5G18670 169 / 2e-46 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018842 [exp] 566 / 0 AT2G45880 879 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Lus10037846 [exp] 462 / 3e-159 AT4G00490 684 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Lus10030392 [exp] 451 / 2e-154 AT4G00490 660 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Lus10035679 [exp] 365 / 9e-119 AT5G45300 884 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Lus10039701 [exp] 266 / 7e-82 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10018491 [exp] 262 / 5e-81 AT4G15210 697 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039702 [exp] 250 / 6e-77 AT4G15210 694 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10003005 [exp] 247 / 6e-76 AT4G17090 709 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10011035 [exp] 243 / 5e-74 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G159300 [exp] 562 / 0 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.014G083700 [exp] 559 / 0 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.014G083800 [exp] 521 / 0 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.003G106500 [exp] 390 / 3e-129 AT5G45300 831 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Potri.017G040800 [exp] 255 / 2e-78 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.001G148900 [exp] 250 / 9e-77 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G085500 [exp] 244 / 1e-74 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.010G062900 [exp] 245 / 2e-74 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.008G174100 [exp] 237 / 2e-71 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.003G143500 [exp] 197 / 2e-56 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01373 [flax] [poplar] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Lus10017820 pacid=23177694 polypeptide=Lus10017820 locus=Lus10017820.g ID=Lus10017820.BGIv1.0 annot-version=v1.0 ATGGACTATGATTCAGGTCAGCTGAAAAGTGTATTTGTGCCCACTCCACCACCTTACGATTTGTCTGCAGGGAATGTGGAAGATGTAGACCAAGCACGGA TTATTCCTCTTGTTTTATGTCCTGCGATTACTATCAATGATAAGCAGATCCCTGATGTACAGGCAAAGCTGTCGGAGCGTGACTTTGCTGGTTCTGCATA TGTATCAGTTTATGTGATGCTGCCAGTGACTGGGTGTAATAATATGAAATGTGAGCTGGCTGATCCAGATGGTCTATTACAGCAGCTGAGAGCACTAAAA TCAGCTGATGTTGATGGTGTCAAGATTGACTGCTGGTGGGGAATAGTTTCGGCTCATGCTCCACAAGAGTATAACTGGCATGGTTACAAGAAGCTTTGTC AGATACTGCGTGAACTTAAGCTAAGTTACAGGGGAGTACTGAAATCGGTCGGAGTAATCCTGACATATTTTTCAATGATAAAGAAGGAAGGCGTAACCCA GAATCTCTCTTGGGGAATTGACAGGGAACGGGTTCTAAGAGGCTTGACGGCTGTTGAGGTATATGATTACATGATAAGTTTCTGGGTAGAGTTTGATGAA TTTTTCGAAGATGGTATCATCTCCTTGATTGAAATTGGCCTTGGGCCCTGTGGTGAGCTTCGGTACCCTTCTAATCCTGTAAAGCATGGTTGGAGATATC CTGGGATTGGTGAATTTCAGTGTTATGATCAATATATGATGCGAAATCTGAGGAAGGCAGCAGAAGCAAGGGGGCACTCATTTTGGGCTAGAGGACCCGA TAATTCTGGTTCCTATAACTCGCGGCCACATGAAACAGGGTTTTTCTGTGGTGGAGGAGACTATGATGGCTGTCATGGGGGGTCCTTCCTGAATTGGTAT TCAAGGGTTTTAGTTGATCATGGTGATCTAGTGCTTTCTTTGGCCAAATTGGCTTTTGAAGGTACCTGCATTACAGCAAAGCTACCAAGTATCCATTGGT GGTACAAGACAGCTAGCCATGCTGCAGAGTTAACTGCTGGAATCTACAACTCATGCAACCGCGATGGCTATGCTGCAATCACAGCAATGCTGATGAAACA CGGGATTGCCTTGAATATCTGTTTCTCCGATTTCGGGATGCTAAACCAACCTGTCGATTTTGCTGAGGGATGTGCAGATCGTGATGGATTATTTTGGCAA GTGTTGAATGCTGCTTGGGACGTCTCTATACAGATTGGCAGCGAGGGTTCATTTCTTTCTCATGATAGAGTTGCCTATAACAAGCTATTGGATAAATGTG AAACTATTGAACGATCCAGACGGAGACATTCTCTGTCATTTACATATCAGAGACTGAGCGTAGCTCTAATGGATAGACACAACTTGCTCAAATTCGAAAG TTTCGTCAAAAGAATGCATGGTAAGCCGCCTGCCTATCCCTAG
AA sequence Show only first row Show all	>Lus10017820 pacid=23177694 polypeptide=Lus10017820 locus=Lus10017820.g ID=Lus10017820.BGIv1.0 annot-version=v1.0 MDYDSGQLKSVFVPTPPPYDLSAGNVEDVDQARIIPLVLCPAITINDKQIPDVQAKLSERDFAGSAYVSVYVMLPVTGCNNMKCELADPDGLLQQLRALK SADVDGVKIDCWWGIVSAHAPQEYNWHGYKKLCQILRELKLSYRGVLKSVGVILTYFSMIKKEGVTQNLSWGIDRERVLRGLTAVEVYDYMISFWVEFDE FFEDGIISLIEIGLGPCGELRYPSNPVKHGWRYPGIGEFQCYDQYMMRNLRKAAEARGHSFWARGPDNSGSYNSRPHETGFFCGGGDYDGCHGGSFLNWY SRVLVDHGDLVLSLAKLAFEGTCITAKLPSIHWWYKTASHAAELTAGIYNSCNRDGYAAITAMLMKHGIALNICFSDFGMLNQPVDFAEGCADRDGLFWQ VLNAAWDVSIQIGSEGSFLSHDRVAYNKLLDKCETIERSRRRHSLSFTYQRLSVALMDRHNLLKFESFVKRMHGKPPAYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Lus10017820 [exp]	0	1
AT4G02030			Vps51/Vps67 family (components...		Lus10036541 [exp]	4.0	0.8119
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Lus10007545 [exp]	12.6	0.6994
AT5G15010			Tetratricopeptide repeat (TPR)...		Lus10042530 [exp]	23.7	0.7035
					Lus10037718 [exp]	29.8	0.6729
AT2G02570			nucleic acid binding;RNA bindi...		Lus10007436 [exp]	35.8	0.7671
AT3G50360		CEN1, ATCEN2	CENTRIN 1, centrin2 (.1)		Lus10009353 [exp]	36.1	0.7644
AT3G13970		APG12B, APG12	AUTOPHAGY 12 B, AUTOPHAGY 12, ...		Lus10000432 [exp]	41.9	0.7800
AT5G36930			Disease resistance protein (TI...		Lus10024886 [exp]	51.9	0.7676
AT5G63670		SPT42	SPT4 homolog 2 (.1.2)		Lus10020394 [exp]	52.4	0.6900
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10017166 [exp]	58.0	0.7551

Compare expression of checked genes

Lus10017820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.