Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61350 329 / 1e-110 SKIP4 SKP1 interacting partner 4 (.1) AT1G55270 131 / 7e-34 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30090 101 / 2e-23 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 97 / 8e-22 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G21950 96 / 2e-21 SKIP6 SKP1 interacting partner 6 (.1) AT3G63220 92 / 3e-20 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G16250 92 / 4e-20 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G22040 91 / 1e-19 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G24540 87 / 9e-19 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT4G39240 86 / 3e-18 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001071 [exp] 128 / 1e-32 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 126 / 4e-32 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042824 [exp] 119 / 1e-29 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 117 / 8e-29 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10023608 [exp] 103 / 2e-24 AT1G26930 353 / 9e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10002112 [exp] 103 / 5e-24 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10025357 [exp] 99 / 3e-22 AT1G22040 497 / 6e-174 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10020960 [exp] 97 / 1e-21 AT1G22040 499 / 7e-175 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013899 [exp] 97 / 1e-21 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G083200 [exp] 381 / 4e-131 AT3G61350 299 / 7e-100 SKP1 interacting partner 4 (.1) Potri.001G008000 [exp] 132 / 3e-34 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 132 / 3e-34 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G193800 [exp] 116 / 9e-29 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G176000 [exp] 114 / 6e-28 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G059200 [exp] 109 / 3e-26 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.007G081100 [exp] 104 / 8e-25 AT2G21950 390 / 3e-135 SKP1 interacting partner 6 (.1) Potri.010G004500 [exp] 104 / 2e-24 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G091900 [exp] 104 / 3e-24 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G104300 [exp] 102 / 1e-23 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10017821 pacid=23177700 polypeptide=Lus10017821 locus=Lus10017821.g ID=Lus10017821.BGIv1.0 annot-version=v1.0 ATGGAAGCTGGATGCGCGAGAATTGACGGTATTGAAGGGGATGATGACACCCAACTGATACGGGGACTTCCAGATGACATTACTCTTTTCTGTTTAGCAA GAGTTCCTCGAAAATATCATACAGTGCTCAAGTGTGTGTCCAAGAGATGGAGAGATTTAGTGTGCAGTGAAGAGTGGCATGAATATCGCAGGAAGAACAA GCTTGCTGAGACTTGGATATATGCTCTTTGTCGTAGCAAGTATGACCTATTAAGCTTGTATGTATTGGACCCTAATTCCCCGAGGAGGTGTTGGAAGCTC ATTACAGGGATTCCAGAGCCTTGTTTGAAGAGAAAAGGTGTTGGTTTTGAAGCATTTGGAAAAAAGATTTACTTAATGGGTGGTTGTGGTTGGTCCCAAG ATACTACAGAAGAAGTCTATTGTTATGACGTTCCAAGGAATTCGTGGACTCACGTTGCTTCCCTGCCAACTGCAAGGTGCTACTTTGCTTGTGAAGTTTT CAATGGAAAAATCTATGCAATTGGAGGGTTGGGTTCAAATCCGAGCGATGTGTCTTCTTGTGACTGCTTTGATCCGAACACAAATACTTGTGCATCATCC CCTGACACCGCTATTGTTTCTGAAATAGATGACTCCATAGTATTGGATGGTAAGATGTATATTCGCTATAGTACTAATGTGTTGCCATCGGATGCACGTG CTATTGTTTATGACCCGGCAAGTGAGACATGGGAGAATGCAGATGATAATTTAGTTTCTGGTTGGAGAGGTCCTGCAGTGGCTGTGGAAGGTAACTTTTA TGTTCTGGACGAGAGTTCGGGAACGAAGTTGATGAAGTGGGATACGGAGAAGAGGGGTTGGGTTAAAGTTGGAAGGCTGTCATCATTGCTCACAAGTCCG CCGTGCCAGTTAGTAGCTGTTGAGAAGAGGATATTCATGGTGGGAAACAGACTTAGCACGGTGGTAGTTGATGTCGGTCACACTGGGATTATGGATGGGG TCATGGTTAGTTCTTCTACACCTGGAGCAACCATGAGAAACGTTGACATGGTTAATAGTCTGTTTGTAAGAAACGTTGTGATCTATCTACCTGGATTCTT TAAACGTTGTTGTCTCGTCTATCCTCGAAAAAAGTCTCCTAAACCAATGTCTGGATGGTTCAAAATTATCGTACATGTTTTAAATTTCTTGACGGAAGAC GTCTTGAGCTCCAACAGTATCCGCAAGCACCTAGACCAATGTGCCATAATCTCTACAGATCAGCAAAAGTAG
AA sequence Show only first row Show all	>Lus10017821 pacid=23177700 polypeptide=Lus10017821 locus=Lus10017821.g ID=Lus10017821.BGIv1.0 annot-version=v1.0 MEAGCARIDGIEGDDDTQLIRGLPDDITLFCLARVPRKYHTVLKCVSKRWRDLVCSEEWHEYRRKNKLAETWIYALCRSKYDLLSLYVLDPNSPRRCWKL ITGIPEPCLKRKGVGFEAFGKKIYLMGGCGWSQDTTEEVYCYDVPRNSWTHVASLPTARCYFACEVFNGKIYAIGGLGSNPSDVSSCDCFDPNTNTCASS PDTAIVSEIDDSIVLDGKMYIRYSTNVLPSDARAIVYDPASETWENADDNLVSGWRGPAVAVEGNFYVLDESSGTKLMKWDTEKRGWVKVGRLSSLLTSP PCQLVAVEKRIFMVGNRLSTVVVDVGHTGIMDGVMVSSSTPGATMRNVDMVNSLFVRNVVIYLPGFFKRCCLVYPRKKSPKPMSGWFKIIVHVLNFLTED VLSSNSIRKHLDQCAIISTDQQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61350		SKIP4	SKP1 interacting partner 4 (.1...		Lus10017821 [exp]	0	1
AT3G25210			Tetratricopeptide repeat (TPR)...		Lus10038215 [exp]	3.7	0.8553
AT5G64350		FKP12, ATFKBP12...	ARABIDOPSIS THALIANA FK506-BIN...		Lus10003760 [exp]	4.7	0.8243
AT1G62810			Copper amine oxidase family pr...		Lus10032206 [exp]	7.3	0.7353
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10027674 [exp]	9.5	0.7971
AT1G12400			Nucleotide excision repair, TF...		Lus10007001 [exp]	11.8	0.7231
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10020260 [exp]	13.0	0.7670
AT4G40030			Histone superfamily protein (....		Lus10012757 [exp]	13.1	0.7591
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10039937 [exp]	17.7	0.7955
AT3G01435			Expressed protein (.1)		Lus10003331 [exp]	20.5	0.7676
AT4G19150			Ankyrin repeat family protein ...		Lus10001048 [exp]	24.8	0.7664

Compare expression of checked genes

Lus10017821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.