Plant FIBer expression Database

Lus10017822 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G00620 489 / 3e-175 EMB3127 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
AT2G38660 412 / 3e-145 Amino acid dehydrogenase family protein (.1.2.3.4)
AT3G12290 395 / 2e-139 Amino acid dehydrogenase family protein (.1)
AT4G00600 384 / 1e-134 Amino acid dehydrogenase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018843
[exp]
604 / 0 AT4G00620 489 / 1e-175 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
Lus10011368
[exp]
517 / 0 AT4G00620 523 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
Lus10006425
[exp]
516 / 0 AT4G00620 529 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
Lus10022670
[exp]
512 / 0 AT4G00620 527 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
Lus10012502
[exp]
422 / 3e-145 AT4G00620 442 / 6e-152 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
Lus10034187
[exp]
407 / 1e-142 AT2G38660 473 / 5e-168 Amino acid dehydrogenase family protein (.1.2.3.4)
Lus10043398
[exp]
402 / 7e-141 AT2G38660 469 / 2e-166 Amino acid dehydrogenase family protein (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G157100
[exp]
505 / 0 AT4G00620 545 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
Potri.006G114100
[exp]
424 / 1e-149 AT2G38660 456 / 2e-161 Amino acid dehydrogenase family protein (.1.2.3.4)
Potri.011G098600
[exp]
383 / 2e-134 AT3G12290 473 / 3e-170 Amino acid dehydrogenase family protein (.1)
Potri.014G080701
[exp]
101 / 4e-27 AT4G00620 101 / 1e-27 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0603 AA_dh_N PF00763 THF_DHG_CYH Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
CL0063 NADP_Rossmann PF02882 THF_DHG_CYH_C Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
Representative CDS sequence
>Lus10017822 pacid=23177713 polypeptide=Lus10017822 locus=Lus10017822.g ID=Lus10017822.BGIv1.0 annot-version=v1.0
ATGAATGATGCAGCATCAGGCGATGCGGTTACCTCCTCCGCTAAGGTGATCAATGGGAAACAAGTGGCCCAAGAAATCAGAGAGGAGATAACTGCTCAAG
TATCCAGAATGAAGGATGCGATTGGTGTTGTTCCCGGATTAGCAGTCATACTTGTTGGTGACAGGAAGGATTCCGCGACTTACGTTCGAAACAAGCAGAA
AGCTTGCGAATCTGCCGGGATTAACTCTTACCAAGTTGGTCTCCCCGAAGATGCAGCTGAAGCTGAGGTTCTCAAACATATCAAGGACTTCAATGATAAC
CCTGCAGTTCATGGCATTCTTGTCCAATTGCCTCTACCAAAGCATATGAACGAAAATACAGTGTTGAATGCTGTTAGTATGGAGAAAGATGTAGATGGTT
TCCACCCTTTGAACATTGGCCGTCTTGCTATGCGAGGAAGAGAACCCTTGTTTGTTCCTTGTACGCCAAAGGGGTGCATTGAGTTGTTGCGTAGGTCCGG
GATTCAGATCAGTGGCAAGAAAGCAGTTGTTATCGGCAGGAGCAATATCGTTGGTACACCAGCTGCTTTGTTGCTTCAGAGGGAGGATGCTACTGTAACA
GTTGTGCACTCGAGGACTAAGGATCCACAGGAGATTGTAAAACAAGCAGATATTGTGGTCTCTGCTGTAGGCCAAGCTAACATGGTGAGAGGAAGTTGGC
TGAAGCCTGGTACTGTTGTCATTGATGTTGGAATCAACGCAGTTGAGGATTCGACGTGCCCTCGAGGTTACAGATTGGTCGGAGATGTTTGCTATGAGGA
GGCCATCAAAGTAGCTTCAGCAATAACTCCAGTTCCGGGGGGAGTTGGTCCTATGACCATAGCAATGCTTCTTTCCAATACTCTCTCCTCAGCGAAACGG
ATACACAACTTTCAGTGA
AA sequence
>Lus10017822 pacid=23177713 polypeptide=Lus10017822 locus=Lus10017822.g ID=Lus10017822.BGIv1.0 annot-version=v1.0
MNDAASGDAVTSSAKVINGKQVAQEIREEITAQVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKQKACESAGINSYQVGLPEDAAEAEVLKHIKDFNDN
PAVHGILVQLPLPKHMNENTVLNAVSMEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLRRSGIQISGKKAVVIGRSNIVGTPAALLLQREDATVT
VVHSRTKDPQEIVKQADIVVSAVGQANMVRGSWLKPGTVVIDVGINAVEDSTCPRGYRLVGDVCYEEAIKVASAITPVPGGVGPMTIAMLLSNTLSSAKR
IHNFQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G00620 EMB3127 EMBRYO DEFECTIVE 3127, Amino a... Lus10017822
[exp]
0 1
AT2G27490 ATCOAE dephospho-CoA kinase family (.... Lus10013897
[exp]
1.0 0.9162
AT1G66240 ATX1, ATATX1 homolog of anti-oxidant 1 (.1.... Lus10028859
[exp]
1.4 0.9027
AT2G37550 ASP1, AGD7 yeast pde1 suppressor 1, ARF-G... Lus10003977
[exp]
3.0 0.9020
AT2G06530 VPS2.1 SNF7 family protein (.1) Lus10037660
[exp]
5.0 0.8982
AT5G53940 Yippee family putative zinc-bi... Lus10015416
[exp]
6.4 0.8578
AT4G30360 ATCNGC17 cyclic nucleotide-gated channe... Lus10023203
[exp]
7.2 0.8997
AT1G26910 RPL10B ribosomal protein L10 B, Ribos... Lus10003055
[exp]
8.1 0.8819
AT3G45020 Ribosomal L18p/L5e family prot... Lus10021433
[exp]
9.0 0.8827
AT1G36310 S-adenosyl-L-methionine-depend... Lus10023545
[exp]
9.2 0.8921
AT3G46020 RNA-binding (RRM/RBD/RNP motif... Lus10040854
[exp]
12.4 0.8774

Lus10017822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.