Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01790 648 / 0 ATKEA1, KEA1 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) AT4G00630 639 / 0 ATKEA2, KEA2 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) AT4G04850 192 / 2e-50 ATKEA3, KEA3 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) AT5G51710 64 / 5e-10 ATKEA5, KEA5 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) AT5G11800 62 / 2e-09 ATKEA6, KEA6 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) AT2G19600 61 / 4e-09 ATKEA4 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018844 [exp] 1775 / 0 AT4G00630 1352 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10009830 [exp] 1011 / 0 AT4G00630 838 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10040938 [exp] 999 / 0 AT4G00630 928 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10009829 [exp] 360 / 5e-116 AT4G00630 372 / 3e-121 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10007104 [exp] 237 / 4e-66 AT4G04850 936 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10020485 [exp] 135 / 9e-33 AT4G04850 704 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10031687 [exp] 85 / 2e-16 AT5G51710 833 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10020484 [exp] 74 / 3e-14 AT4G04850 286 / 1e-91 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10008002 [exp] 63 / 1e-09 AT2G19600 781 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157200 [exp] 707 / 0 AT1G01790 1343 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.014G080800 [exp] 694 / 0 AT1G01790 1300 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.009G080800 [exp] 188 / 4e-49 AT4G04850 841 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Potri.012G130500 [exp] 69 / 1e-11 AT5G51710 830 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.015G132400 [exp] 69 / 1e-11 AT5G51710 791 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.006G230400 [exp] 56 / 2e-07 AT5G11800 731 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) Potri.018G054100 [exp] 55 / 3e-07 AT5G11800 740 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02254 [flax] [poplar] TrkA_N TrkA-N domain CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10017823 pacid=23177711 polypeptide=Lus10017823 locus=Lus10017823.g ID=Lus10017823.BGIv1.0 annot-version=v1.0 ATGGTCGTTCCTGTGGATTTCTCGTCTGGTGTGTGCCCGTCTAATTCGTTCCACGGCTGTGAAGGCACGAGTTATAGGGTGTTTAGCAAGCTGAATTCGA GGCTTGGATATAAACGTTTCAATTCCGAGTCTGTTAATTGGAAGGATAGGTTGTCCAAGAGGATTAATAACAGGGCATTTCTTTCTAGTAGCCGGTTAAA TTCGAGTCTGGTTTCCAATGGAGGGCTTCCTAGTGGTTGGTGGAGTGGCTACTCCGATCATTCCTTGTTTTCTGCCTCTTGTATTGCTTTTAGGCTATCG ACAGCGGTCAGGAGGAATTGCCAGGGTAATGATTCTCTAGCATATGACAATGGGAATGGTCGAAACGTAGACTTGGTGGAAGATAGCGGTGGGAGTTCGA AAACTGAGTCTACTGACTCAGTCGTGGAAGCCGGAGAAGAAAAAGAAGCGGACACTCTCAGCTTGGATGAGCTAAGGGAATTGTTGCAGAAGGCTATGAA AGAGTTGGAAGTTGCACGACTAAATAGTACTATGTTTGAGGAGAAGGCGCAGCAAATTTCTGAAGCTGCAATAGCGTTGAAGGATGATGCGTCAAGTGCT TGGAGCGATGTTAATGCTGCCCTGGATGTGATTCAACAGATTGTAAATGAGGAGTCTGTTGCCAAAGAAGCTGTTCAGAAAGCCACCATGTCCCTCTCGT TGGCTGAGGCTAGGCTGATGGTGGCAACAGAATCATTAGAACCTTTTCCAGAAGAAACTGTTTCTCTAGAGGGATATGCAGCGAGTGACATTGAAAGTAA TGAACATGACCAAGTAATTTTAGCTGCACATAAAGATATCAAGGAATGTCAGGAAAATTTGCTGAATTGTGAGGCTGACCTGAAACGATTGCAAAATAAG AAAGAGGAGTTGCAGCAAGAGGTAGATAGATTGAAGGGTGTTGCTGACATAACACAAATGGATGCACTAAAAGCAGAAGAAGAGGTTGGCAATATCATGC TTTTAGCTGAGCAAGCTGTTGCATTTGAAATTGAGGCCACCAAACTTGTGAGTGATGCTGAAATCGCATTACACAGAGCAGAGAAGTCCCTCTCTGGATC TAATGTTGATACATCGGACACAACACAGGGACATATGTCTGGTGACGTGGCTGTTATTGAGGAGGAGATGGTGGATGAAAGAATCAATGTTGAAATTGTA AAAGAAATTGATTTGCTAACTGATGGGGATGTTTTCATTGTTGAGCCTGCTCATGAGAGACTGTCTGATAAAACAAGTCTCAGTTCTAAGGACATGCCTC AAACTGATGCTATTTGTGATCACGAAAGTGGACATGCGACTCTTGAACGTCCTATAGACTCTGAACCGGAAGTGGAAAAATCAAAGAAGGGCACTCAAGT TAGAAAACAGGATCCGCAAAAGGAAGCAATGAGAGAGAGCTCACCTTCACCTTTCAATGCTCAAAAGGCATCATTGAACAAATCTTCTCGTTTCTTCCCT GCATCATTCTTCTCATTCACTATAGATGGGACAGAGTTGACACCGACATCAGTTTTCCAAAGTTTCATGAACTCTGCAAAGCACCAATTACCTAAGCTTG TCGTTGGGCTGCTACTCATTGGAGGAGGGGTTGCATTCTACACAAATCGCTTGGATAGAAGTTCTCAGATGCTTCAGCAGCCTGAGATTGTCACCTCCAG TGTTGAAGAAGTTTCCTCCAATGTGAAGCCCGTGACTGTTCAAATAAAGAAGCTCTCAAAGAAAATCAACGAGGAGGAGGCTTCTCTATTTGATATGCTG TGGTTACTTCTTGCTATTGTCATATTCGTGCCCATCTTTCAGAAAATCCCTGGAGGTAGTCCTGTCCTTGGGTACTTGACTGCTGGCATTTTGATTGGTC CTTATGGCTTGTCTATAATTCGTCATGTGCACGGGACAAAGGCGATTGCTGAATTTGGAGTTGTTTTTCTGCTGTTCAATATTGGGCTAGAGCTTTCAGT CGAAAGACTTAGTTCGATGAAGAAATATGTCTTTGGCTTAGGCTCAGCTCAGGTCTTGGTGACAGCAGTTGTTGCTGGTTTGGCCGCTCACTTTTTTGCC GGGGTCCCTGGTCCGGCTGCAATTGTAATTGGCAATGGCCTAGCTTTATCGTCAACTGCTGTTGTTCTGCAGCTGCTTCGACCAATATATAAGCAGATTG CTGAAAATCAGAATGCGGAGATATTCTCTGCCAATACCCTTCTTGTTATTCTTGGGACTAGTCTCCTCACTGCCAGGGCGGGACTCTCCATGGCACTGGG AGCATTTCTTGCTGGTTTGCTCCTTGCCGAAACTGAATTTTCGTTGCAAGTTGAATCAGATATTGCTCCTTACCGGGGTCTTCTTTTAGGCCTCTTCTTC ATGACAGTTGGGATGTCAATCGACCCGAAACTGCTTTTTTCGAACTTCCCAGTCATTATGGGGACACTGGGACTTCTAATAGTAGGGAAGACACTTTTGG TTGCTTTAGTTGGCAGGCTTTTTGGTGTTTCCCTTATTTCTGCAATAAGAGTTGGCCTCCTTCTTGCCCCCGGGGGTGAATTCGCGTTTGTTGCTTTTGG TGAAGCTGTTAATCAGAGTATAATGTCTCCCCAGCTTTCATCATTGTTGTTTCTTGTTGTGGGAATTTCTATGGCCATCACACCATGGCTAGCTGCTGGT GGTCAGCTAATTGCCTCCCGTTTTGAGCTTCATGATGTTCGAAGTCTATTGCCAGTTGAAAGTGAGACAGATGACTTGCAGGGTCACATTATCATCTGTG GATTCGGGCGCGTTGGGCAGATTATTGCACAACTTCTTTCAGAACGGTTGATTCCATTTGTGGCTCTCGACGTCAGGAGTGACAGGGTGGCAGTCGGGCG CGCCTTGGACCTTCCAGTGTATTTTGGAGATGCCGGTAGCCGAGAGGTTCTCCATAAAGTTGGAGCTGAAAGAGCATGTGCTGCTGCAATAACATTGGAT TCACCTGGTGCAAATTATAGAACAGTTTGGGCTCTCAGCAAGCATTTCCCCAACGTGAAGACTTTCGTCAGGGCGCACGATGTAGACCATGGCCTCAATT TGGAAAAAGCTGGAGCCTCTGCTGTTGTCCCTGAGACTCTGGAACCAAGTCTGCAGTTGGCTGCTGCTGTTCTTGCACAGGCTAAACTCCCGACCTCCGA GATCGCTGCAACGATCAACGAATTTAGATCCCGTCATTTGTCCGAGCTCACAGAGCTATGTGAAGCCAGTGGAAGTTCTCTTGGTTATGGATTTTCACGG GTCATGACCAACATAATAAATCTGAAGAAGAAGGCTGATGACGACCGGAGTCGAGGGCAACAGCTTAGCTTCATCACCTCGACGGTGGGTTATCTTCCCT CAACTTTCATCCCTATCGTTTTTCACAATAAAATGGGGAAAAGAGGATAA
AA sequence Show only first row Show all	>Lus10017823 pacid=23177711 polypeptide=Lus10017823 locus=Lus10017823.g ID=Lus10017823.BGIv1.0 annot-version=v1.0 MVVPVDFSSGVCPSNSFHGCEGTSYRVFSKLNSRLGYKRFNSESVNWKDRLSKRINNRAFLSSSRLNSSLVSNGGLPSGWWSGYSDHSLFSASCIAFRLS TAVRRNCQGNDSLAYDNGNGRNVDLVEDSGGSSKTESTDSVVEAGEEKEADTLSLDELRELLQKAMKELEVARLNSTMFEEKAQQISEAAIALKDDASSA WSDVNAALDVIQQIVNEESVAKEAVQKATMSLSLAEARLMVATESLEPFPEETVSLEGYAASDIESNEHDQVILAAHKDIKECQENLLNCEADLKRLQNK KEELQQEVDRLKGVADITQMDALKAEEEVGNIMLLAEQAVAFEIEATKLVSDAEIALHRAEKSLSGSNVDTSDTTQGHMSGDVAVIEEEMVDERINVEIV KEIDLLTDGDVFIVEPAHERLSDKTSLSSKDMPQTDAICDHESGHATLERPIDSEPEVEKSKKGTQVRKQDPQKEAMRESSPSPFNAQKASLNKSSRFFP ASFFSFTIDGTELTPTSVFQSFMNSAKHQLPKLVVGLLLIGGGVAFYTNRLDRSSQMLQQPEIVTSSVEEVSSNVKPVTVQIKKLSKKINEEEASLFDML WLLLAIVIFVPIFQKIPGGSPVLGYLTAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVAGLAAHFFA GVPGPAAIVIGNGLALSSTAVVLQLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFF MTVGMSIDPKLLFSNFPVIMGTLGLLIVGKTLLVALVGRLFGVSLISAIRVGLLLAPGGEFAFVAFGEAVNQSIMSPQLSSLLFLVVGISMAITPWLAAG GQLIASRFELHDVRSLLPVESETDDLQGHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRALDLPVYFGDAGSREVLHKVGAERACAAAITLD SPGANYRTVWALSKHFPNVKTFVRAHDVDHGLNLEKAGASAVVPETLEPSLQLAAAVLAQAKLPTSEIAATINEFRSRHLSELTELCEASGSSLGYGFSR VMTNIINLKKKADDDRSRGQQLSFITSTVGYLPSTFIPIVFHNKMGKRG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Lus10017823 [exp]	0	1
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10018844 [exp]	1.0	0.9454
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Lus10028731 [exp]	4.0	0.8067
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Lus10033422 [exp]	4.2	0.8163
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10024645 [exp]	5.7	0.7713
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Lus10014023 [exp]	7.9	0.7456
AT4G33480			unknown protein		Lus10003851 [exp]	8.4	0.7863
AT5G57160		ATLIG4	DNA ligase IV (.1)		Lus10020013 [exp]	13.0	0.7511
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10016830 [exp]	13.8	0.8049
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10036857 [exp]	15.5	0.7594
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Lus10000967 [exp]	17.4	0.8232

Compare expression of checked genes

Lus10017823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.