Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62990 269 / 1e-91 HD IXR11, KNAT7 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) AT5G25220 233 / 4e-76 HD KNAT3 KNOTTED1-like homeobox gene 3 (.1.2) AT5G11060 226 / 1e-73 HD KNAT4 KNOTTED1-like homeobox gene 4 (.1) AT4G32040 209 / 3e-67 HD KNAT5 KNOTTED1-like homeobox gene 5 (.1) AT1G70510 90 / 1e-21 HD ATK1, KNAT2 ARABIDOPSIS THALIANA KN 1, KNOTTED-like from Arabidopsis thaliana 2 (.1) AT1G23380 87 / 2e-20 HD KNAT6S, KNAT6L, KNAT6 KNOTTED1-like homeobox gene 6 (.1.2) AT1G62360 78 / 5e-17 HD WAM1, WAM, SHL, BUM1, STM WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) AT4G08150 78 / 5e-17 HD BP1, KNAT1 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) AT2G27990 61 / 6e-11 HD PNF, BLH8 POUND-FOOLISH, BEL1-like homeodomain 8 (.1) AT1G75430 58 / 2e-10 HD BLH11 BEL1-like homeodomain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024485 [exp] 325 / 3e-114 AT1G62990 406 / 4e-144 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Lus10001941 [exp] 221 / 2e-71 AT5G25220 439 / 2e-153 KNOTTED1-like homeobox gene 3 (.1.2) Lus10003183 [exp] 211 / 9e-70 AT5G25220 381 / 2e-133 KNOTTED1-like homeobox gene 3 (.1.2) Lus10001934 [exp] 210 / 3e-67 AT5G25220 435 / 9e-152 KNOTTED1-like homeobox gene 3 (.1.2) Lus10006291 [exp] 210 / 7e-67 AT5G25220 489 / 3e-172 KNOTTED1-like homeobox gene 3 (.1.2) Lus10030003 [exp] 82 / 2e-18 AT1G62360 315 / 5e-105 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Lus10029125 [exp] 80 / 5e-18 AT1G23380 417 / 3e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10013037 [exp] 80 / 5e-18 AT1G23380 417 / 4e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10007245 [exp] 76 / 9e-18 AT4G08150 250 / 3e-83 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112200 [exp] 287 / 1e-98 AT1G62990 466 / 2e-167 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Potri.006G259400 [exp] 238 / 1e-77 AT5G25220 539 / 0.0 KNOTTED1-like homeobox gene 3 (.1.2) Potri.018G022700 [exp] 221 / 3e-71 AT5G25220 513 / 0.0 KNOTTED1-like homeobox gene 3 (.1.2) Potri.018G114100 [exp] 211 / 2e-68 AT5G25220 441 / 6e-155 KNOTTED1-like homeobox gene 3 (.1.2) Potri.006G190000 [exp] 199 / 9e-64 AT5G25220 434 / 4e-152 KNOTTED1-like homeobox gene 3 (.1.2) Potri.005G014200 [exp] 105 / 1e-27 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.013G008600 [exp] 104 / 3e-27 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.015G079100 [exp] 86 / 5e-20 AT1G23380 309 / 3e-104 KNOTTED1-like homeobox gene 6 (.1.2) Potri.012G087100 [exp] 83 / 3e-19 AT1G23380 323 / 1e-109 KNOTTED1-like homeobox gene 6 (.1.2) Potri.010G043500 [exp] 81 / 2e-18 AT1G23380 371 / 3e-129 KNOTTED1-like homeobox gene 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain CL0123 [flax] [poplar] PF03789 [flax] [poplar] ELK ELK domain
Representative CDS sequence Show only first row Show all	>Lus10017824 pacid=23148823 polypeptide=Lus10017824 locus=Lus10017824.g ID=Lus10017824.BGIv1.0 annot-version=v1.0 ATGCCGAATGATGAGTTTTTTTGGGTGGCAGGAATGAGTTTAGGAGAAGGAACAGGGGCAACAATGTCGGACGATGAAGATGATCAGTCAATGCACATGG ATTTTAGTCTTGATCCACCAGGATTGATGACAAGTAGTAGTACTAGTGCTGTTGGGGATCCACATGACATGAACATGATGATGGGGTTCGGCCCTCTTCT CCCAACCGAATCAGAACGTTCTCTAATGGAGAGAGTTCGTCAGGAACTGAAGATAGAGCTGAAGCAAGGTTTCAAATCCAGAATCGAAGATGTCAGAGAA GAGATACTCAGAAAGAGAAGAGCTGGAAAATTACCAGGAGACACCACCACTGTTCTTAAAAACTGGTGGCAGCAACACTCGAAATGGCCTTATCCTACTG AAGATGACAAGGCAAAGCTGGTGGAGGAGACAGGGCTGCAACTGAAGCAAATAAACAACTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGTAACTC TCAATCTGTCACCTCCCTCAAGTCCAAGCGTAAAAGGTAG
AA sequence Show only first row Show all	>Lus10017824 pacid=23148823 polypeptide=Lus10017824 locus=Lus10017824.g ID=Lus10017824.BGIv1.0 annot-version=v1.0 MPNDEFFWVAGMSLGEGTGATMSDDEDDQSMHMDFSLDPPGLMTSSSTSAVGDPHDMNMMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVRE EILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10017824 [exp]	0	1
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10024485 [exp]	1.4	0.9227
AT5G38900			Thioredoxin superfamily protei...		Lus10005083 [exp]	2.0	0.8610
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10001195 [exp]	2.0	0.9023
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Lus10013592 [exp]	2.6	0.8549
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10025425 [exp]	3.0	0.8852
AT2G26800			Aldolase superfamily protein (...		Lus10036056 [exp]	6.0	0.8571
AT1G17970			RING/U-box superfamily protein...		Lus10021722 [exp]	7.0	0.7851
AT5G65500			U-box domain-containing protei...		Lus10035947 [exp]	7.7	0.8583
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10004745 [exp]	11.0	0.8227
AT5G38895			RING/U-box superfamily protein...		Lus10005084 [exp]	11.3	0.8482

Compare expression of checked genes

Lus10017824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.