Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43840 392 / 3e-133 UGT74F1 UDP-glycosyltransferase 74 F1 (.1.2) AT2G43820 387 / 3e-131 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT1G05675 384 / 6e-130 UDP-Glycosyltransferase superfamily protein (.1) AT1G05680 383 / 1e-129 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT2G31750 365 / 9e-123 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT1G24100 348 / 5e-116 UGT74B1 UDP-glucosyl transferase 74B1 (.1) AT2G31790 340 / 1e-112 UDP-Glycosyltransferase superfamily protein (.1) AT4G15480 249 / 4e-77 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT4G15490 245 / 8e-76 UGT84A3 UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 243 / 1e-74 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006353 [exp] 577 / 0 AT2G43820 398 / 1e-135 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10014148 [exp] 551 / 0 AT2G43840 407 / 2e-139 UDP-glycosyltransferase 74 F1 (.1.2) Lus10024486 [exp] 534 / 0 AT1G05680 389 / 4e-132 Uridine diphosphate glycosyltransferase 74E2 (.1) Lus10008742 [exp] 508 / 2e-178 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10006352 [exp] 506 / 1e-177 AT2G43820 414 / 6e-142 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10006721 [exp] 486 / 2e-170 AT2G43820 392 / 9e-134 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10010712 [exp] 394 / 1e-133 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1) Lus10020556 [exp] 387 / 3e-131 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020559 [exp] 379 / 1e-127 AT2G43820 436 / 3e-150 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G175000 [exp] 476 / 6e-166 AT2G43840 411 / 8e-141 UDP-glycosyltransferase 74 F1 (.1.2) Potri.017G032300 [exp] 427 / 1e-146 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G140500 [exp] 421 / 2e-144 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2) Potri.001G389200 [exp] 413 / 4e-141 AT1G05680 494 / 2e-173 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.004G179300 [exp] 411 / 2e-140 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032500 [exp] 411 / 2e-140 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.007G140300 [exp] 410 / 3e-140 AT1G05680 457 / 4e-159 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032700 [exp] 405 / 3e-138 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032733 [exp] 405 / 3e-138 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.015G071900 [exp] 396 / 1e-134 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10017825 pacid=23148848 polypeptide=Lus10017825 locus=Lus10017825.g ID=Lus10017825.BGIv1.0 annot-version=v1.0 ATGGCGGGCGATGAAAGAGAAAAAGCCCACTGCTTAGTGGTCCCAGCTGCAGCCCAAGGCCACTTCACCCCACTTCTCCAATTCTCCAAGCGCTTAATCC CCAAACGGATCCGGGTCACTCTGGCTCTCACCCGTTTCATCCACAGCACCATGACCGTCACCGCACAATCCGGTATCCACATCGACACTATCTCCGACGG CTTCGACCACAGCGGACTTATATTGCAAGACCCAGAACACTATTCCCAAACCTTTCGGAGAGTGGGTTCCGAAACCCTCACGGATCTCATCCGGAAACAG AGCGAATCACGGCACCCTGTCCACTGTATAATTTACGATGCAAGTATGCCCTGGTTCCTGGACGTCGCCAAGCGGTTTGGGATTGTGGGAGCTGCATTTC TCACTCAGTCATGCGCGGTCAACGCCATCTATTACCACCTTCGCGAGGGAACAATCAAGCGTCCTGTAGTCTCGGATCCTGCTGCAGGAACGCTCGTAAT TGATGGATTGCCGCCACTGGAGGTTTCGGACTTGCCTTCTTTCATTTGGGATGACTTGCACACGGAATTTCTTGCCGCGCATTTGAGGCAGTTCTCCAAT GACGGCGCCGATTGGGTGTTCTGCAACACAGTTTACCAGCTGGAACTAGAGGCCGTGGATTGGCTAACAAAGCAGTGGCTGATCAACTTCCGAACAATTG GACCAACTATCCCATCCTTTTATTTAGACAAGCAAATCCCTGATGACAAAGACTACGACATCAGCATCTTCAACCCACAAAATCAAACTTGCATGAACTG GCTTCAATCTAAGCCAGATGGATCAGTCGTGTATGTATCATTCGGAAGCCTAGCCAGACTTTCACCACAACAAACTGAGGAGCTCTATTTCGGTTTGAAG AACAGCAACCATTACTTCTTGTGGGTAGTCAGGGAATCCGAAGTCGCCAAACTCCCAAAGGAGGAGTACTTATCGGGCGAGAAAGGACTCGTTGTGTCAT GGTGTTCGCAGCTTCAAGTCCTGGCAAGTGGGAAGGTAGGGTGTTTCGTTACACATTGCGGATGGAACTCGACTCTGGAAGCGCTCAGTCTGGGAGTTCC CATGGTGGCAATGCCAGAATGCGGCGATCAACTCACCAATGCAAAGTTCATAAAGGACGTGTGGAAAACCGGAGTGAGAGCTGAAGCTGATGATGGCAAG GGGATAATGTGGGGAATGATCAAGAGGGAAGTGATCGAGAGGTGCATAAGAGAAGTGATGGAAGGAGAAGAGACGAGAAGAAATGCTGACAAGTGGGGAA AGATTATCAAAGAAGCTGTTGTTGAAGGTGGAAGTTCTGATAAAAACACCGAGGATTTTGCTACTAGCTTGATCAATTTCGCTGAAACTTTCCAATTTAG CTGCTGA
AA sequence Show only first row Show all	>Lus10017825 pacid=23148848 polypeptide=Lus10017825 locus=Lus10017825.g ID=Lus10017825.BGIv1.0 annot-version=v1.0 MAGDEREKAHCLVVPAAAQGHFTPLLQFSKRLIPKRIRVTLALTRFIHSTMTVTAQSGIHIDTISDGFDHSGLILQDPEHYSQTFRRVGSETLTDLIRKQ SESRHPVHCIIYDASMPWFLDVAKRFGIVGAAFLTQSCAVNAIYYHLREGTIKRPVVSDPAAGTLVIDGLPPLEVSDLPSFIWDDLHTEFLAAHLRQFSN DGADWVFCNTVYQLELEAVDWLTKQWLINFRTIGPTIPSFYLDKQIPDDKDYDISIFNPQNQTCMNWLQSKPDGSVVYVSFGSLARLSPQQTEELYFGLK NSNHYFLWVVRESEVAKLPKEEYLSGEKGLVVSWCSQLQVLASGKVGCFVTHCGWNSTLEALSLGVPMVAMPECGDQLTNAKFIKDVWKTGVRAEADDGK GIMWGMIKREVIERCIREVMEGEETRRNADKWGKIIKEAVVEGGSSDKNTEDFATSLINFAETFQFSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10017825 [exp]	0	1
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Lus10005435 [exp]	2.8	0.8579
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Lus10035566 [exp]	4.0	0.8130
AT3G02645			Plant protein of unknown funct...		Lus10015084 [exp]	4.5	0.7975
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10033663 [exp]	5.3	0.7513
AT5G41720			unknown protein		Lus10006473 [exp]	6.0	0.8123
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10035828 [exp]	8.5	0.7747
AT5G10530			Concanavalin A-like lectin pro...		Lus10042310 [exp]	11.0	0.7587
					Lus10003693 [exp]	13.6	0.7366
					Lus10036058 [exp]	15.0	0.7456
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10043378 [exp]	15.6	0.8094

Compare expression of checked genes

Lus10017825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.