Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12570 657 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT3G56060 596 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 588 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G72970 550 / 0 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT5G51930 537 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G73050 449 / 1e-152 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14190 385 / 2e-128 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14185 380 / 1e-126 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024487 [exp] 1014 / 0 AT1G12570 709 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10002957 [exp] 815 / 0 AT1G12570 701 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10027406 [exp] 590 / 0 AT5G51950 694 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10031663 [exp] 585 / 0 AT5G51950 694 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10015623 [exp] 581 / 0 AT1G72970 777 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10038891 [exp] 580 / 0 AT5G51950 668 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10015012 [exp] 578 / 0 AT5G51950 667 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10003176 [exp] 565 / 0 AT1G72970 822 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10037640 [exp] 563 / 0 AT1G72970 768 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G111500 [exp] 786 / 0 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G200800 [exp] 584 / 0 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.003G039000 [exp] 578 / 0 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.012G135200 [exp] 453 / 1e-155 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.008G009600 [exp] 454 / 1e-154 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168200 [exp] 398 / 9e-133 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 392 / 1e-130 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168100 [exp] 387 / 9e-129 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G249501 [exp] 65 / 2e-12 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10017827 pacid=23148850 polypeptide=Lus10017827 locus=Lus10017827.g ID=Lus10017827.BGIv1.0 annot-version=v1.0 ATGGGTAGCTTTTACGGTCTCGTCGGCGTCCACTTCTTCTTCTTTTTCTATGTTTTCCAAGGATGCAGCCCCTCTGCTGCTAACCAAGCTGATGATCGCA ATTACAAATTTGTCCACGACGCGACCACTGCGCCTGAGGTGTCCTACTATGACTACATAATCGTGGGAGGAGGCACAGCAGGGTGTCCGTTGGCGGCCAC ACTCTCTCAAAACGCCAGCGTTTTGGTGCTGGAACGCGGGGGTTCCCCTTATGGCAACCCAAACATCACAAACTTGGCCAACTTTGGAGCCCCACTCTCG GACAACTCCCCTTACTCACCTGCACAGCGATTCATCTCCGAGGACGGAGTCATCAATTCACGCGCCCGCGTTCTAGGTGGCGGAACTTGCCTCAACGCCG GCTTCTACTCCCGCGCATCCGCCGATTACATCAGGGAAGTGGGGTGGAATGTTAAGTTGGCGGAGGAATCGTATCAATGGGTTGAGAAAAAAGTGGCATT CCGGCCACCCATGGGACCTTGGCAGTCTGCCATTAGAGATGCTCTTGTCCATTCCGGTGTGGCCCCTAACAATGGTTTCACTTACGACCATATTTATGGT ACCAAATTTGGTGGCTCCATCTTCGACACGTCCGGCCATCGGCACACCTCAGCCGATCTGCTCGACTACGCCAACCCCGACCGCCTCACCGTTCTTCTTA AGGCCACTACTCGCAAAATCCTCTTCAGAACTAAAGGAAGGGCAAGGCCCACAGCTCAGGGAGTGTCGTTTAGAGACGCAGCCGGGGTGAAGCACAGAGC GTATTTAAGAAAAGGAGCCCACAATGAAATAATCATAGCTGCTGGGGCACTAGGAAGCCCACAGCTATTGATGCTGAGTGGAGTAGGCCCAGCCCACCAA CTCAGTTACCACAACATTACTGTTATACTTGACCAGCCCATGGTCGGACAGCTCATGTCCGATAATCCCATGAATGCCGTTTTCGTTCCTTCGCCGGTGC CGGTGGAGGTTTCCCTCATTGAGGTCGTCGGGATCACCCACTTCGGCGGCTATATTGAAGCCGCCAGCGGTGTTAACTTCGGGGGATACTCCAACAATGA TCACGGCTTGTTTTCCCCCAAAATTGGTCAATCATCAGATGCAACATACAACACGAGCAAGGTAGACATGTCAGCCTTCCAGGGAGGCTTCATCCTTCAA AAAATCATGGGACCTCTATCAACCGGGCACTTGAAGCTCATCTCTAGAAACCCTAACAAAAACCCATCTGTCACATTCAATTACTTCAAGCACCCTCAAG ATTTGGACCGATGTGTGCAAGGGATGTCGATGATAGAGAAAGTGATCGACTCAAAATTCTTTTCGAAATTCAAGTACGATTTCATGTCAGTCCCCGATCT ACTCAACCTAACAGCGAGTGCCGTAATGAACTTGCTACCGAAGCACGACAATTCAGCGACATCATTGGAACAATTCTGTAAGGACACTGTGGTGACTATA TGGCATTACCATGGTGGATGCCAAGTAGGAGCTGTGGTGGGTAGTGATTACAAGGTGCTTGGAGTTGATGCGTTGAGGGTTATTGATGGTTCCACTTTTA ATGCATCCCCTGGCACTAATCCTCAGGCCACAGTCATGATGCTTGGAAGGTATATGGGAGTCAAGATGTTGAGTGAGAGGCTTGCAAGTACTGAAGGCTA A
AA sequence Show only first row Show all	>Lus10017827 pacid=23148850 polypeptide=Lus10017827 locus=Lus10017827.g ID=Lus10017827.BGIv1.0 annot-version=v1.0 MGSFYGLVGVHFFFFFYVFQGCSPSAANQADDRNYKFVHDATTAPEVSYYDYIIVGGGTAGCPLAATLSQNASVLVLERGGSPYGNPNITNLANFGAPLS DNSPYSPAQRFISEDGVINSRARVLGGGTCLNAGFYSRASADYIREVGWNVKLAEESYQWVEKKVAFRPPMGPWQSAIRDALVHSGVAPNNGFTYDHIYG TKFGGSIFDTSGHRHTSADLLDYANPDRLTVLLKATTRKILFRTKGRARPTAQGVSFRDAAGVKHRAYLRKGAHNEIIIAAGALGSPQLLMLSGVGPAHQ LSYHNITVILDQPMVGQLMSDNPMNAVFVPSPVPVEVSLIEVVGITHFGGYIEAASGVNFGGYSNNDHGLFSPKIGQSSDATYNTSKVDMSAFQGGFILQ KIMGPLSTGHLKLISRNPNKNPSVTFNYFKHPQDLDRCVQGMSMIEKVIDSKFFSKFKYDFMSVPDLLNLTASAVMNLLPKHDNSATSLEQFCKDTVVTI WHYHGGCQVGAVVGSDYKVLGVDALRVIDGSTFNASPGTNPQATVMMLGRYMGVKMLSERLASTEG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10017827 [exp]	0	1
AT1G12330			unknown protein		Lus10024559 [exp]	2.4	0.8804
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10013956 [exp]	3.2	0.8857
					Lus10022823 [exp]	4.9	0.8696
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10041893 [exp]	6.7	0.8769
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Lus10012896 [exp]	6.7	0.8460
AT1G12330			unknown protein		Lus10032197 [exp]	8.7	0.8098
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10027175 [exp]	9.5	0.8444
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018351 [exp]	9.8	0.8564
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10005279 [exp]	12.8	0.8649
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006610 [exp]	14.0	0.8497

Compare expression of checked genes

Lus10017827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.