Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63030 87 / 6e-22 AP2_ERF DDF2�ADREB1E DWARF AND DELAYED FLOWERING 2, Integrase-type DNA-binding superfamily protein (.1.2) AT4G25470 87 / 7e-22 AP2_ERF DREB1C, FTQ4, CBF2, ATCBF2 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) AT4G25490 86 / 2e-21 AP2_ERF DREB1B, CBF1, ATCBF1 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) AT5G51990 86 / 2e-21 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) AT4G25480 85 / 6e-21 AP2_ERF CBF3, DREB1A, ATCBF3 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) AT1G12610 84 / 7e-21 AP2_ERF DDF1, DREB1F, FTL1 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) AT2G36450 61 / 6e-12 AP2_ERF HRD HARDY, Integrase-type DNA-binding superfamily protein (.1) AT5G25810 58 / 8e-11 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT4G32800 57 / 1e-10 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G52020 56 / 4e-10 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024491 [exp] 219 / 2e-73 AT4G25480 187 / 6e-60 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) Lus10006332 [exp] 129 / 4e-38 AT1G12610 194 / 1e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10001871 [exp] 129 / 4e-38 AT1G12610 193 / 4e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10006334 [exp] 129 / 9e-38 AT1G12610 193 / 3e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10029601 [exp] 120 / 2e-34 AT1G12610 191 / 3e-61 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10031654 [exp] 98 / 3e-26 AT4G25490 201 / 9e-66 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10027414 [exp] 98 / 3e-26 AT4G25490 208 / 1e-68 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10017829 [exp] 92 / 3e-24 AT1G63030 181 / 1e-58 DWARF AND DELAYED FLOWERING 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10029602 [exp] 91 / 9e-24 AT1G12610 181 / 2e-58 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G110700 [exp] 111 / 4e-31 AT5G51990 201 / 8e-65 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.012G134100 [exp] 109 / 3e-30 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110800 [exp] 102 / 3e-27 AT4G25470 164 / 4e-50 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Potri.015G136400 [exp] 95 / 1e-24 AT5G51990 189 / 2e-60 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.003G121200 [exp] 65 / 1e-13 AT5G52020 149 / 2e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.004G187001 [exp] 63 / 2e-12 AT4G25490 124 / 1e-34 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Potri.016G018600 [exp] 61 / 6e-12 AT2G36450 135 / 7e-40 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.015G136300 [exp] 58 / 9e-11 AT5G52020 132 / 7e-38 Integrase-type DNA-binding superfamily protein (.1) Potri.006G021000 [exp] 57 / 2e-10 AT2G36450 122 / 5e-35 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.019G067400 [exp] 56 / 3e-10 AT5G25810 120 / 6e-34 TINY, Integrase-type DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017828 pacid=23148793 polypeptide=Lus10017828 locus=Lus10017828.g ID=Lus10017828.BGIv1.0 annot-version=v1.0 ATGGCCGCTCGTGCTCATGACGTGGCGTCCCTCGCCTTCCGCGGGGAATCCGGCTGCCTCAACTTCGCCGATTCTGCCTGGAGGCTTCCCGCCCCTGCTT CCTTGGACCCCAAGGATGTCAGGAAGGCTGCTGCTCAAGCCGCAGAGATGTTTCGCCCACAGAGCTGCTTCCCGGCGGCGGAATCAGAGGAAGAGGAAGA GGAACGTAATTACTCATGCTTCAGCACTAGTTATTTTGATAATAATAATAATAATGAGTGGTGTAATAATAATTATGTGGACGAAGAGGAAGTGCTGGAG ATGCCGAGGTTGCTGTCGGAAATGGCTGAGGGGCTTTTGCTGTCTCCACCGTGGACCTATGGATTTGGGACTGATGATAATCAGTGGGGACATTTGGTAG AGACTGATGACGCTGATCACTATAATTGGTCACTGTGGAATTAG
AA sequence Show only first row Show all	>Lus10017828 pacid=23148793 polypeptide=Lus10017828 locus=Lus10017828.g ID=Lus10017828.BGIv1.0 annot-version=v1.0 MAARAHDVASLAFRGESGCLNFADSAWRLPAPASLDPKDVRKAAAQAAEMFRPQSCFPAAESEEEEEERNYSCFSTSYFDNNNNNEWCNNNYVDEEEVLE MPRLLSEMAEGLLLSPPWTYGFGTDDNQWGHLVETDDADHYNWSLWN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Lus10017828 [exp]	0	1
AT4G25480	AP2_ERF	CBF3, DREB1A, A...	C-REPEAT BINDING FACTOR 3, de...		Lus10024491 [exp]	1.0	0.9804
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021436 [exp]	3.2	0.8838
AT5G52250		EFO1, RUP1	REPRESSOR OF UV-B PHOTOMORPHOG...		Lus10005742 [exp]	3.5	0.8660
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10012570 [exp]	7.9	0.8421
AT2G23440			unknown protein		Lus10002969 [exp]	8.5	0.8640
					Lus10038720 [exp]	9.5	0.8426
AT2G31230	AP2_ERF	ATERF15	ethylene-responsive element bi...		Lus10022935 [exp]	11.2	0.6872
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10023977 [exp]	12.0	0.8428
AT4G29280		LCR22	low-molecular-weight cysteine-...		Lus10015983 [exp]	15.2	0.8370
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Lus10026877 [exp]	16.2	0.8370

Compare expression of checked genes

Lus10017828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.