Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23030 603 / 0 MATE efflux family protein (.1) AT1G58340 523 / 0 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) AT4G29140 522 / 0 ADS1 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) AT5G52050 513 / 2e-179 MATE efflux family protein (.1) AT5G19700 499 / 1e-173 MATE efflux family protein (.1) AT1G71870 442 / 3e-151 MATE efflux family protein (.1) AT2G38510 440 / 7e-151 MATE efflux family protein (.1) AT5G49130 377 / 5e-126 MATE efflux family protein (.1) AT4G22790 282 / 3e-89 MATE efflux family protein (.1) AT1G71140 248 / 5e-76 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027417 [exp] 651 / 0 AT4G23030 601 / 0.0 MATE efflux family protein (.1) Lus10007231 [exp] 565 / 0 AT1G58340 649 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10012944 [exp] 488 / 6e-169 AT4G29140 639 / 0.0 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) Lus10028230 [exp] 477 / 2e-164 AT1G58340 567 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10025237 [exp] 417 / 2e-140 AT2G38510 640 / 0.0 MATE efflux family protein (.1) Lus10009788 [exp] 387 / 4e-130 AT5G49130 627 / 0.0 MATE efflux family protein (.1) Lus10025156 [exp] 362 / 4e-121 AT2G38510 568 / 0.0 MATE efflux family protein (.1) Lus10038987 [exp] 344 / 4e-113 AT1G71870 527 / 0.0 MATE efflux family protein (.1) Lus10007006 [exp] 295 / 8e-94 AT4G22790 549 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G121400 [exp] 709 / 0 AT4G23030 635 / 0.0 MATE efflux family protein (.1) Potri.012G133500 [exp] 681 / 0 AT4G23030 578 / 0.0 MATE efflux family protein (.1) Potri.015G135600 [exp] 665 / 0 AT4G23030 576 / 0.0 MATE efflux family protein (.1) Potri.002G107200 [exp] 567 / 0 AT1G58340 600 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.007G043100 [exp] 481 / 2e-166 AT1G58340 475 / 8e-164 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.013G115600 [exp] 460 / 2e-158 AT1G71870 637 / 0.0 MATE efflux family protein (.1) Potri.019G086100 [exp] 452 / 2e-155 AT1G71870 654 / 0.0 MATE efflux family protein (.1) Potri.016G134800 [exp] 432 / 8e-147 AT2G38510 597 / 0.0 MATE efflux family protein (.1) Potri.010G011400 [exp] 404 / 1e-136 AT5G49130 611 / 0.0 MATE efflux family protein (.1) Potri.003G116700 [exp] 305 / 1e-97 AT4G22790 441 / 2e-151 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10017836 pacid=23148816 polypeptide=Lus10017836 locus=Lus10017836.g ID=Lus10017836.BGIv1.0 annot-version=v1.0 ATGTGCACCGCCGGCTTATCTCCTCCCTCCGACGACAACACCATAATCAACATGACATTAACAAAAACCCTGATCCCCAAAACCCAGACACCATCCCAAT CCCATCTGACATTGGCAATCCAAGAAGCTAAACTAATCTCCAACATAGCACTCCCAATGATCCTAACTGGTCTCCTTCTCTACTCCCGCTCCATGATCTC AATGCTCTTCCTCGGCCGCCTCGAAGGCGACCTCCCTTTAGCCGGCGGCTCCTTAGCCATCGGATTCGCCAACATCACCGGCTACTCAATCCTCTCCGGC CTCGCTTCCGGAATGGAACCCATATGTAACCAGTCTTACGGCGCCAAGCGTTACAAACTCCTCTCCTTAACCCTCCACCGTACAATCGTCCTCCTCCTCT TAGTCACCATCCCAATCTCCTTCCTCTGGCTCAACGTCAAATCCATCCTCCTCTTCTTCGGCCAGCAATACGACATCGCATCGGAAGCCCAATCCTATCT CCTCTACTCTCTCCCTGACCTTATCTCCCTCTCTTTCCTCCACCCTCTCAGAATCTACCTTCGTTCCCAGTCTATCACTCTGCCTCTCACCCTCTGCGCC TCTTTCTCAATCCTCCTCCATTTCCCAATTAATTATCTCCTCGTCTCTGTTTTCCAACTCGGTACCAAAGGCGTCGCCTTAGCCGCCGTGTGGACCAATT TCAATCTGGTCGTCTCTTTGATTGCTTACGTTTACCTCTCCGGGGTTTATAAGAAGACCTGGGTGGCGGTTTCTTCCGATTGCTTCAAAGGTTGGAACTC GCTGCTCGGATTGGCGATTCCCAGCTGCGTTTCAGTCTGTTTGGAATGGTGGTGGTATGAAATCATGATCGTTTTATGCGGATTGTTGCTGAATCCCAGA GCCACCGTAGCTTCCATGGGGATTTTGATTCAGACTACTTCCTTGATTTATATTTTCCCTTCTTCTTTGAGTTTCGGAGTTTCCACACGGGTCGGTAACG AGTTGGGTGCGAATAACCCGACCCGTGCGCAATTAGCGGCCCTTGTCGGGATGTCGTCGAGCTTTGTGTTGGGGATATTGACGATGTTGTTCGCGGTTAT GGTGAGGAATACTTGGGCTACGATGTTCACCGCAGATGTCAAGATTATAGCGCTGACTTCGATGATTCTGCCGATTATCGGGGTTTGCGAGCTTGGGAAT TGTCCACAGACGACAGGGTGTGGAGTGTTGAGAGGGAGTGCTCGCCCGAAACTCGGGGCGAACATTAATTTGGGGTGTTTCTACCTTGTCGGAATGCCGG TTGCTGTGTTGTTGAGCTTTTATTTGGGTTATGACTTCAGGGGACTCTGGCTTGGACTCATGGCTGCACAAGGGTCTTGTCTTGTCACAATGTTGTTTGT TGTGTCGAGGACCGATTGGAGAGCTGAGGCTGATAGGGCTAAACAACTTACTTCTTCCACCAACCAACAAGAAGAAGAAGACCATGTTGATGGTGTTAAA ACATTATTTAATGAAGTCGAATCGGATAGCAACAAACCATTATTGGTGTAA
AA sequence Show only first row Show all	>Lus10017836 pacid=23148816 polypeptide=Lus10017836 locus=Lus10017836.g ID=Lus10017836.BGIv1.0 annot-version=v1.0 MCTAGLSPPSDDNTIINMTLTKTLIPKTQTPSQSHLTLAIQEAKLISNIALPMILTGLLLYSRSMISMLFLGRLEGDLPLAGGSLAIGFANITGYSILSG LASGMEPICNQSYGAKRYKLLSLTLHRTIVLLLLVTIPISFLWLNVKSILLFFGQQYDIASEAQSYLLYSLPDLISLSFLHPLRIYLRSQSITLPLTLCA SFSILLHFPINYLLVSVFQLGTKGVALAAVWTNFNLVVSLIAYVYLSGVYKKTWVAVSSDCFKGWNSLLGLAIPSCVSVCLEWWWYEIMIVLCGLLLNPR ATVASMGILIQTTSLIYIFPSSLSFGVSTRVGNELGANNPTRAQLAALVGMSSSFVLGILTMLFAVMVRNTWATMFTADVKIIALTSMILPIIGVCELGN CPQTTGCGVLRGSARPKLGANINLGCFYLVGMPVAVLLSFYLGYDFRGLWLGLMAAQGSCLVTMLFVVSRTDWRAEADRAKQLTSSTNQQEEEDHVDGVK TLFNEVESDSNKPLLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23030			MATE efflux family protein (.1...		Lus10017836 [exp]	0	1
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10027347 [exp]	5.7	0.8710
AT2G42430	AS2	ASL18, LBD16	ASYMMETRIC LEAVES2-LIKE 18, la...		Lus10014757 [exp]	7.3	0.8157
AT1G01490			Heavy metal transport/detoxifi...		Lus10017520 [exp]	10.7	0.8937
AT5G37840			unknown protein		Lus10043472 [exp]	14.5	0.8405
AT5G05340			Peroxidase superfamily protein...		Lus10034207 [exp]	14.6	0.8832
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10014398 [exp]	14.7	0.8622
AT5G67400		RHS19	root hair specific 19 (.1)		Lus10032035 [exp]	20.1	0.8802
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10036437 [exp]	25.0	0.8619
AT5G10530			Concanavalin A-like lectin pro...		Lus10004277 [exp]	25.7	0.8668
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10038141 [exp]	29.4	0.8169

Compare expression of checked genes

Lus10017836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.